Hb_000329_790

Information

Type -
Description -
Location Contig329: 592018-593340
Sequence    

Annotation

kegg
ID tcc:TCM_005685
description hypothetical protein
nr
ID XP_012083854.1
description PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2MUU4
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G071800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34594: 591428-592956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_790 0.0 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
2 Hb_005064_070 0.0931877053 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
3 Hb_048476_040 0.1006155143 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
4 Hb_132840_020 0.1031688114 - - PREDICTED: protein LHY [Jatropha curcas]
5 Hb_009449_100 0.1040268568 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
6 Hb_001179_010 0.1086044589 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
7 Hb_000366_050 0.111877621 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
8 Hb_001514_240 0.1120809893 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_011381_070 0.1130999272 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
10 Hb_000009_150 0.1150321985 - - carbohydrate transporter, putative [Ricinus communis]
11 Hb_001102_200 0.1207747048 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
12 Hb_026698_020 0.1215874769 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_005080_020 0.1238400876 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_003430_070 0.1257011534 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
15 Hb_054865_050 0.1260917144 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_000007_440 0.1269474134 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
17 Hb_086639_050 0.1308135329 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_001195_230 0.1343513184 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
19 Hb_000110_260 0.1350024248 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
20 Hb_002411_160 0.1352997393 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_790 Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_000329_790--Hb_005064_070 Hb_048476_040 Hb_048476_040 Hb_000329_790--Hb_048476_040 Hb_132840_020 Hb_132840_020 Hb_000329_790--Hb_132840_020 Hb_009449_100 Hb_009449_100 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050 Hb_005064_070--Hb_048476_040 Hb_003670_030 Hb_003670_030 Hb_005064_070--Hb_003670_030 Hb_054865_050 Hb_054865_050 Hb_005064_070--Hb_054865_050 Hb_005064_070--Hb_009449_100 Hb_000375_060 Hb_000375_060 Hb_005064_070--Hb_000375_060 Hb_048476_040--Hb_132840_020 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_009449_100--Hb_054865_050 Hb_001514_240 Hb_001514_240 Hb_009449_100--Hb_001514_240 Hb_002259_220 Hb_002259_220 Hb_009449_100--Hb_002259_220 Hb_026698_020 Hb_026698_020 Hb_009449_100--Hb_026698_020 Hb_001357_060 Hb_001357_060 Hb_001179_010--Hb_001357_060 Hb_000007_440 Hb_000007_440 Hb_001179_010--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_001179_010--Hb_007483_080 Hb_000096_110 Hb_000096_110 Hb_001179_010--Hb_000096_110 Hb_001179_010--Hb_026698_020 Hb_000366_050--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_000366_050--Hb_001158_120 Hb_002609_290 Hb_002609_290 Hb_000366_050--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_000366_050--Hb_005539_100 Hb_001294_040 Hb_001294_040 Hb_000366_050--Hb_001294_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.94656 17.5735 19.6233 14.6531 0.713636 1.85905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.993459 0.687703 1.62965 7.39821 10.1017

CAGE analysis