Hb_000330_010

Information

Type -
Description -
Location Contig330: 26851-27103
Sequence    

Annotation

kegg
ID pop:POPTR_0005s25020g
description POPTRDRAFT_818738; hypothetical protein
nr
ID XP_002306876.1
description hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H4C6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25020g PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna polymerase epsilon catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34686: 26684-27111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_010 0.0 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
2 Hb_086639_110 0.0001530292 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
3 Hb_000107_690 0.0043976871 - - zinc finger protein, putative [Ricinus communis]
4 Hb_003251_020 0.0046301045 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
5 Hb_000130_430 0.004956013 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
6 Hb_158909_010 0.0053511813 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_001136_150 0.0056794464 - - conserved hypothetical protein [Ricinus communis]
8 Hb_037000_010 0.0083423958 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
9 Hb_001248_160 0.0093049297 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
10 Hb_004957_040 0.0101831021 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
11 Hb_163180_010 0.0132278319 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_000134_140 0.0135114606 - - lipid binding protein, putative [Ricinus communis]
13 Hb_001926_060 0.014331407 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
14 Hb_007058_020 0.0153104293 - - -
15 Hb_131748_010 0.0217591084 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
16 Hb_176760_010 0.02253537 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_000340_170 0.0275551338 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
18 Hb_156212_010 0.0276400316 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000002_020 0.0283962291 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
20 Hb_004918_020 0.0300575879 - - -

Gene co-expression network

sample Hb_000330_010 Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_000330_010--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_000330_010--Hb_000107_690 Hb_003251_020 Hb_003251_020 Hb_000330_010--Hb_003251_020 Hb_000130_430 Hb_000130_430 Hb_000330_010--Hb_000130_430 Hb_158909_010 Hb_158909_010 Hb_000330_010--Hb_158909_010 Hb_001136_150 Hb_001136_150 Hb_000330_010--Hb_001136_150 Hb_086639_110--Hb_000107_690 Hb_086639_110--Hb_003251_020 Hb_086639_110--Hb_000130_430 Hb_086639_110--Hb_158909_010 Hb_086639_110--Hb_001136_150 Hb_000107_690--Hb_003251_020 Hb_000107_690--Hb_158909_010 Hb_037000_010 Hb_037000_010 Hb_000107_690--Hb_037000_010 Hb_004957_040 Hb_004957_040 Hb_000107_690--Hb_004957_040 Hb_003251_020--Hb_158909_010 Hb_003251_020--Hb_037000_010 Hb_003251_020--Hb_004957_040 Hb_000130_430--Hb_001136_150 Hb_001248_160 Hb_001248_160 Hb_000130_430--Hb_001248_160 Hb_163180_010 Hb_163180_010 Hb_000130_430--Hb_163180_010 Hb_000130_430--Hb_000107_690 Hb_158909_010--Hb_037000_010 Hb_158909_010--Hb_004957_040 Hb_001136_150--Hb_001248_160 Hb_001136_150--Hb_163180_010 Hb_001926_060 Hb_001926_060 Hb_001136_150--Hb_001926_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.99613 28.3872 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis