Hb_000330_040

Information

Type -
Description -
Location Contig330: 36496-40161
Sequence    

Annotation

kegg
ID vvi:100241970
description protein RER1B
nr
ID XP_012071890.1
description PREDICTED: protein RER1B-like [Jatropha curcas]
swissprot
ID O48671
description Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2
trembl
ID A0A067KQM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04451 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rer1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34689: 36722-38307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_040 0.0 - - PREDICTED: protein RER1B-like [Jatropha curcas]
2 Hb_001019_180 0.0717177549 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
3 Hb_073562_010 0.0797637039 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
4 Hb_000976_210 0.0808809249 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
5 Hb_008775_040 0.0819500641 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
6 Hb_002636_180 0.0821316102 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_000345_140 0.0827446454 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
8 Hb_002890_090 0.0829547755 - - Auxin response factor 1 [Glycine soja]
9 Hb_002043_140 0.0850720518 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
10 Hb_000392_150 0.0909537003 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
11 Hb_003082_010 0.0934894411 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
12 Hb_002110_030 0.0939811916 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
13 Hb_005288_010 0.0971233854 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_001005_190 0.0973508613 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
15 Hb_003455_020 0.0983735977 - - PREDICTED: transportin-1 [Jatropha curcas]
16 Hb_002006_040 0.0999837607 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
17 Hb_000264_320 0.100171053 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
18 Hb_000441_070 0.1027677274 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
19 Hb_000175_220 0.1041061412 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
20 Hb_011311_020 0.1052447921 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000330_040 Hb_000330_040 Hb_001019_180 Hb_001019_180 Hb_000330_040--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_000330_040--Hb_073562_010 Hb_000976_210 Hb_000976_210 Hb_000330_040--Hb_000976_210 Hb_008775_040 Hb_008775_040 Hb_000330_040--Hb_008775_040 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002110_030 Hb_002110_030 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_003020_050 Hb_003020_050 Hb_073562_010--Hb_003020_050 Hb_073562_010--Hb_002110_030 Hb_073562_010--Hb_008775_040 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_002043_140 Hb_002043_140 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_000976_210--Hb_002890_090 Hb_000264_320 Hb_000264_320 Hb_008775_040--Hb_000264_320 Hb_000175_220 Hb_000175_220 Hb_008775_040--Hb_000175_220 Hb_002636_100 Hb_002636_100 Hb_008775_040--Hb_002636_100 Hb_008775_040--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_008775_040--Hb_000140_230 Hb_002636_180--Hb_002890_090 Hb_002636_180--Hb_000345_140 Hb_002636_180--Hb_000976_210 Hb_001967_030 Hb_001967_030 Hb_002636_180--Hb_001967_030 Hb_000820_120 Hb_000820_120 Hb_002636_180--Hb_000820_120 Hb_003785_040 Hb_003785_040 Hb_000345_140--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000345_140--Hb_000441_070 Hb_000345_140--Hb_002043_140 Hb_128743_010 Hb_128743_010 Hb_000345_140--Hb_128743_010 Hb_006420_040 Hb_006420_040 Hb_000345_140--Hb_006420_040 Hb_000395_130 Hb_000395_130 Hb_000345_140--Hb_000395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.34346 15.7925 4.14466 5.02371 10.7478 7.06569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88071 6.95584 11.0467 10.2433 3.82501

CAGE analysis