Hb_000330_090

Information

Type -
Description -
Location Contig330: 65429-68193
Sequence    

Annotation

kegg
ID rcu:RCOM_1595060
description ornithine carbamoyltransferase, putative (EC:2.1.3.3)
nr
ID XP_002510416.1
description ornithine carbamoyltransferase, putative [Ricinus communis]
swissprot
ID Q43814
description Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum GN=ARGF PE=2 SV=1
trembl
ID B9R7X3
description Ornithine carbamoyltransferase, putative OS=Ricinus communis GN=RCOM_1595060 PE=3 SV=1
Gene Ontology
ID GO:0004585
description ornithine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34702: 65525-67029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_090 0.0 - - ornithine carbamoyltransferase, putative [Ricinus communis]
2 Hb_049575_010 0.0731086843 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
3 Hb_000174_260 0.0756486883 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
4 Hb_001269_130 0.0793116496 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
5 Hb_002693_030 0.0795121116 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
6 Hb_007904_230 0.0836298895 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
7 Hb_007199_020 0.0870102999 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
8 Hb_001804_090 0.0880087652 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
9 Hb_000189_570 0.0912832013 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
10 Hb_001147_050 0.0918312053 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
11 Hb_005883_080 0.0919828666 - - type 2A protein phosphatase-2 [Populus trichocarpa]
12 Hb_005946_150 0.0926566575 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
13 Hb_006637_030 0.0938170137 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
14 Hb_000120_890 0.0940520667 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
15 Hb_001269_620 0.0964222979 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
16 Hb_000364_050 0.0967265381 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
17 Hb_003498_100 0.0983789377 - - component of oligomeric golgi complex, putative [Ricinus communis]
18 Hb_005686_130 0.0987736179 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
19 Hb_003266_030 0.0992153989 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
20 Hb_000076_210 0.0992953355 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000330_090 Hb_000330_090 Hb_049575_010 Hb_049575_010 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_007904_230 Hb_007904_230 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_073973_090 Hb_073973_090 Hb_049575_010--Hb_073973_090 Hb_049575_010--Hb_007904_230 Hb_001269_620 Hb_001269_620 Hb_049575_010--Hb_001269_620 Hb_007558_090 Hb_007558_090 Hb_049575_010--Hb_007558_090 Hb_000364_050 Hb_000364_050 Hb_049575_010--Hb_000364_050 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_000174_260--Hb_001269_130 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_006637_030 Hb_006637_030 Hb_002693_030--Hb_006637_030 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_053709_050 Hb_053709_050 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_026198_010 Hb_026198_010 Hb_002693_030--Hb_026198_010 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_007904_230--Hb_000080_130 Hb_001804_090 Hb_001804_090 Hb_007199_020--Hb_001804_090 Hb_001623_500 Hb_001623_500 Hb_007199_020--Hb_001623_500 Hb_005214_170 Hb_005214_170 Hb_007199_020--Hb_005214_170 Hb_007199_020--Hb_007904_230 Hb_007199_020--Hb_000174_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.28106 13.7093 46.0785 27.5466 8.2049 8.52457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3216 25.6509 16.8739 27.2927 27.9135

CAGE analysis