Hb_000330_100

Information

Type -
Description -
Location Contig330: 70283-76688
Sequence    

Annotation

kegg
ID tcc:TCM_005517
description NAD(P)-binding Rossmann-fold superfamily protein, putative
nr
ID CAN80655.1
description hypothetical protein VITISV_011650 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0E0FPW0
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0003824
description dihydroflavonol 4-reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34703: 70278-76617 , PASA_asmbl_34704: 70282-73023 , PASA_asmbl_34705: 71151-76571 , PASA_asmbl_34706: 70490-123841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_100 0.0 - - hypothetical protein VITISV_011650 [Vitis vinifera]
2 Hb_001450_050 0.0971156844 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000796_220 0.1082626525 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
4 Hb_002217_300 0.1096110234 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
5 Hb_046198_010 0.1118273295 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
6 Hb_000832_020 0.1131873031 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
7 Hb_028089_010 0.114902131 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
8 Hb_089032_040 0.1177533483 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
9 Hb_001617_050 0.1179957333 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
10 Hb_000092_010 0.1209996761 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
11 Hb_002311_040 0.1210136054 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
12 Hb_000011_330 0.1211239569 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
13 Hb_003976_030 0.1222220263 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
14 Hb_148209_100 0.1222810632 - - phosphatidylinositol 4-kinase, putative [Ricinus communis]
15 Hb_001143_190 0.1225299983 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
16 Hb_010139_040 0.1229017558 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001493_030 0.122914902 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
18 Hb_003862_050 0.122932759 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
19 Hb_000032_100 0.1230199241 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
20 Hb_002835_370 0.1233144708 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000330_100 Hb_000330_100 Hb_001450_050 Hb_001450_050 Hb_000330_100--Hb_001450_050 Hb_000796_220 Hb_000796_220 Hb_000330_100--Hb_000796_220 Hb_002217_300 Hb_002217_300 Hb_000330_100--Hb_002217_300 Hb_046198_010 Hb_046198_010 Hb_000330_100--Hb_046198_010 Hb_000832_020 Hb_000832_020 Hb_000330_100--Hb_000832_020 Hb_028089_010 Hb_028089_010 Hb_000330_100--Hb_028089_010 Hb_004369_020 Hb_004369_020 Hb_001450_050--Hb_004369_020 Hb_003728_080 Hb_003728_080 Hb_001450_050--Hb_003728_080 Hb_010139_040 Hb_010139_040 Hb_001450_050--Hb_010139_040 Hb_002835_040 Hb_002835_040 Hb_001450_050--Hb_002835_040 Hb_148209_100 Hb_148209_100 Hb_001450_050--Hb_148209_100 Hb_000808_230 Hb_000808_230 Hb_000796_220--Hb_000808_230 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_000170_210 Hb_000170_210 Hb_000796_220--Hb_000170_210 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000796_220--Hb_085781_010 Hb_000796_220--Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_000898_040 Hb_000898_040 Hb_002217_300--Hb_000898_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_000335_020 Hb_000335_020 Hb_046198_010--Hb_000335_020 Hb_000011_330 Hb_000011_330 Hb_046198_010--Hb_000011_330 Hb_001266_060 Hb_001266_060 Hb_046198_010--Hb_001266_060 Hb_000567_380 Hb_000567_380 Hb_046198_010--Hb_000567_380 Hb_000063_140 Hb_000063_140 Hb_046198_010--Hb_000063_140 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_002835_370 Hb_002835_370 Hb_028089_010--Hb_002835_370 Hb_009548_020 Hb_009548_020 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_028089_010--Hb_000032_100 Hb_188063_020 Hb_188063_020 Hb_028089_010--Hb_188063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1876 6.08042 8.13813 7.48947 13.7833 14.4626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68505 9.30983 23.8021 13.1551 5.90122

CAGE analysis