Hb_000331_080

Information

Type -
Description -
Location Contig331: 69905-79065
Sequence    

Annotation

kegg
ID tcc:TCM_014622
description hypothetical protein
nr
ID XP_012471146.1
description PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
swissprot
ID Q8GWQ6
description UPF0235 protein At5g63440 OS=Arabidopsis thaliana GN=At5g63440 PE=1 SV=1
trembl
ID A0A0D2NZS8
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G121200 PE=4 SV=1
Gene Ontology
ID GO:0005634
description upf0235 protein at5g63440

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34755: 69894-78882
cDNA
(Sanger)
(ID:Location)		 015_C23.ab1: 70113-78882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_080 0.0 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
2 Hb_153112_020 0.0450331036 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
3 Hb_004994_100 0.0561476673 - - acyl-CoA thioesterase, putative [Ricinus communis]
4 Hb_008878_030 0.0581497215 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
5 Hb_000840_030 0.0599757034 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
6 Hb_002686_020 0.062521515 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
7 Hb_012725_050 0.0659868368 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
8 Hb_026527_030 0.0681163897 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
9 Hb_000787_050 0.0712280393 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
10 Hb_011224_110 0.0727983519 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
11 Hb_000834_270 0.0734362714 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
12 Hb_000201_120 0.0735738407 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
13 Hb_002928_130 0.0748177325 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
14 Hb_004204_120 0.0756006812 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
15 Hb_002030_040 0.076190726 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
16 Hb_004657_050 0.076202032 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
17 Hb_001821_010 0.0772118029 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
18 Hb_001662_070 0.0772179115 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
19 Hb_001105_030 0.0774824755 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
20 Hb_004837_140 0.0780295863 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]

Gene co-expression network

sample Hb_000331_080 Hb_000331_080 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_153112_020--Hb_000840_030 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_002477_070 Hb_002477_070 Hb_004994_100--Hb_002477_070 Hb_001277_330 Hb_001277_330 Hb_004994_100--Hb_001277_330 Hb_034299_050 Hb_034299_050 Hb_004994_100--Hb_034299_050 Hb_026527_030 Hb_026527_030 Hb_004994_100--Hb_026527_030 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030 Hb_002686_020--Hb_003050_080 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.4186 13.0905 21.2241 17.0869 34.752 29.5687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.7004 59.1496 43.3026 20.5814 17.1415

CAGE analysis