Hb_000331_100

Information

Type -
Description -
Location Contig331: 90996-102992
Sequence    

Annotation

kegg
ID rcu:RCOM_1506560
description ATP binding protein, putative (EC:3.6.4.3)
nr
ID XP_012079854.1
description PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
swissprot
ID P28737
description Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSP1 PE=1 SV=2
trembl
ID A0A067K480
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11308 PE=3 SV=1
Gene Ontology
ID GO:0005515
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34757: 90979-102723 , PASA_asmbl_34758: 91533-92244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_100 0.0 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
2 Hb_008165_020 0.0454601142 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
3 Hb_000428_030 0.0640484357 - - hypothetical protein RCOM_1520720 [Ricinus communis]
4 Hb_013358_060 0.0689181361 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
5 Hb_000035_100 0.0718377367 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_003964_110 0.0734095307 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
7 Hb_009476_120 0.0777060614 - - Clathrin heavy chain 1 [Glycine soja]
8 Hb_000200_110 0.0793745997 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
9 Hb_004696_070 0.0800203164 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
10 Hb_143629_020 0.0802393124 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
11 Hb_000260_760 0.0806279547 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_001414_010 0.0808959764 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
13 Hb_006794_020 0.0819261387 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
14 Hb_000665_260 0.0840245543 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
15 Hb_000220_120 0.0848114959 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
16 Hb_000664_090 0.0851784971 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
17 Hb_003124_270 0.0852290332 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
18 Hb_000844_050 0.0861769061 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
19 Hb_004551_020 0.0863197388 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
20 Hb_116349_130 0.0863625764 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_100 Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000331_100--Hb_008165_020 Hb_000428_030 Hb_000428_030 Hb_000331_100--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_003964_110 Hb_003964_110 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_013358_060--Hb_002078_470 Hb_013358_060--Hb_000428_030 Hb_013358_060--Hb_000035_100 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_009476_120--Hb_001414_010 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75616 22.0576 12.8483 14.3274 7.34371 5.63192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05022 4.91974 4.06592 13.9749 15.8031

CAGE analysis