Hb_000331_110

Information

Type -
Description -
Location Contig331: 104101-109419
Sequence    

Annotation

kegg
ID rcu:RCOM_1506590
description Conserved oligomeric Golgi complex component, putative
nr
ID XP_002511204.1
description Conserved oligomeric Golgi complex component, putative [Ricinus communis]
swissprot
ID Q14746
description Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1
trembl
ID B9RAH9
description Conserved oligomeric Golgi complex component, putative OS=Ricinus communis GN=RCOM_1506590 PE=4 SV=1
Gene Ontology
ID GO:0016020
description conserved oligomeric golgi complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34760: 108338-108781 , PASA_asmbl_34761: 109932-111624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_110 0.0 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
2 Hb_079526_030 0.0499632138 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
3 Hb_000260_680 0.0615222492 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
4 Hb_003878_110 0.0632787288 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
5 Hb_001089_110 0.063378136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001821_160 0.0633956663 - - serine/arginine rich splicing factor, putative [Ricinus communis]
7 Hb_002876_230 0.064965546 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
8 Hb_003861_050 0.0674677386 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
9 Hb_001433_070 0.0675616003 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
10 Hb_001186_090 0.0676286764 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
11 Hb_000575_040 0.0680220395 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
12 Hb_001153_210 0.0682507189 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
13 Hb_005779_010 0.0692451764 - - catalytic, putative [Ricinus communis]
14 Hb_000245_220 0.0699870579 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
15 Hb_162286_010 0.0707729846 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
16 Hb_008642_040 0.0709458852 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
17 Hb_000005_220 0.0711771203 - - DNA ligase 1, partial [Glycine soja]
18 Hb_002684_040 0.0717304558 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
19 Hb_004970_190 0.0721838013 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_005867_070 0.0728424321 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000331_110 Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_079526_030--Hb_001089_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_079526_030--Hb_003878_110 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_001776_060 Hb_001776_060 Hb_000260_680--Hb_001776_060 Hb_002217_110 Hb_002217_110 Hb_000260_680--Hb_002217_110 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_003878_110--Hb_001433_070 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_004052_080 Hb_004052_080 Hb_002876_230--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_002876_230--Hb_000339_040 Hb_001456_060 Hb_001456_060 Hb_002876_230--Hb_001456_060 Hb_007007_120 Hb_007007_120 Hb_002876_230--Hb_007007_120 Hb_009911_030 Hb_009911_030 Hb_002876_230--Hb_009911_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91499 1.94101 3.22271 1.75723 2.62454 2.80951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11929 2.44587 1.58959 2.10808 2.27458

CAGE analysis