Hb_000331_150

Information

Type -
Description -
Location Contig331: 131887-135000
Sequence    

Annotation

kegg
ID rcu:RCOM_1506640
description WD-repeat protein, putative
nr
ID XP_002511209.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9M3B4
description Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1
trembl
ID B9RAI4
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1506640 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein root initiation defective 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_150 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000038_030 0.1972977332 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
3 Hb_000291_280 0.2013313982 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
4 Hb_003069_020 0.217291993 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000397_070 0.219973241 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_011218_060 0.2216903734 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
7 Hb_067188_010 0.2292931851 - - -
8 Hb_006029_020 0.2293598428 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
9 Hb_004324_350 0.2297101975 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
10 Hb_019153_040 0.2336026513 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
11 Hb_000590_040 0.2374507161 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
12 Hb_003768_040 0.2385752322 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_024505_050 0.2388801248 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
14 Hb_127003_010 0.2437819679 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
15 Hb_022148_010 0.2450997991 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
16 Hb_000431_020 0.2512285726 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
17 Hb_182424_010 0.2561374716 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
18 Hb_001506_010 0.2565796735 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_164732_010 0.2584873318 - - -
20 Hb_002233_090 0.2603503752 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_150 Hb_000331_150 Hb_000038_030 Hb_000038_030 Hb_000331_150--Hb_000038_030 Hb_000291_280 Hb_000291_280 Hb_000331_150--Hb_000291_280 Hb_003069_020 Hb_003069_020 Hb_000331_150--Hb_003069_020 Hb_000397_070 Hb_000397_070 Hb_000331_150--Hb_000397_070 Hb_011218_060 Hb_011218_060 Hb_000331_150--Hb_011218_060 Hb_067188_010 Hb_067188_010 Hb_000331_150--Hb_067188_010 Hb_002233_090 Hb_002233_090 Hb_000038_030--Hb_002233_090 Hb_000038_030--Hb_011218_060 Hb_000038_030--Hb_000291_280 Hb_001102_110 Hb_001102_110 Hb_000038_030--Hb_001102_110 Hb_000431_020 Hb_000431_020 Hb_000038_030--Hb_000431_020 Hb_005227_070 Hb_005227_070 Hb_000291_280--Hb_005227_070 Hb_000427_030 Hb_000427_030 Hb_000291_280--Hb_000427_030 Hb_098993_010 Hb_098993_010 Hb_000291_280--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_000291_280--Hb_000088_040 Hb_022148_010 Hb_022148_010 Hb_000291_280--Hb_022148_010 Hb_127003_010 Hb_127003_010 Hb_000291_280--Hb_127003_010 Hb_000590_040 Hb_000590_040 Hb_003069_020--Hb_000590_040 Hb_004324_350 Hb_004324_350 Hb_003069_020--Hb_004324_350 Hb_070926_010 Hb_070926_010 Hb_003069_020--Hb_070926_010 Hb_001766_100 Hb_001766_100 Hb_003069_020--Hb_001766_100 Hb_000684_370 Hb_000684_370 Hb_003069_020--Hb_000684_370 Hb_000397_070--Hb_000291_280 Hb_012340_010 Hb_012340_010 Hb_000397_070--Hb_012340_010 Hb_003893_170 Hb_003893_170 Hb_000397_070--Hb_003893_170 Hb_000997_210 Hb_000997_210 Hb_000397_070--Hb_000997_210 Hb_010638_020 Hb_010638_020 Hb_000397_070--Hb_010638_020 Hb_000397_070--Hb_000427_030 Hb_002391_230 Hb_002391_230 Hb_011218_060--Hb_002391_230 Hb_011218_060--Hb_000291_280 Hb_182424_010 Hb_182424_010 Hb_011218_060--Hb_182424_010 Hb_011218_060--Hb_005227_070 Hb_000622_310 Hb_000622_310 Hb_011218_060--Hb_000622_310 Hb_011909_040 Hb_011909_040 Hb_011218_060--Hb_011909_040 Hb_067188_010--Hb_000038_030 Hb_067188_010--Hb_004324_350 Hb_099864_010 Hb_099864_010 Hb_067188_010--Hb_099864_010 Hb_004306_070 Hb_004306_070 Hb_067188_010--Hb_004306_070 Hb_067188_010--Hb_022148_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.544106 0 0.055542 0.112058 1.9799 0.542109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100888 0.291018 1.78484 0.602487 0.0551936

CAGE analysis