Hb_000331_170

Information

Type -
Description -
Location Contig331: 141214-146274
Sequence    

Annotation

kegg
ID rcu:RCOM_1506660
description leucine-rich repeat protein, putative (EC:1.3.1.74)
nr
ID XP_012079866.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
swissprot
ID Q8LFN2
description Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1
trembl
ID A0A067K3Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11317 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at3g03770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34770: 141264-142536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_170 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
2 Hb_000031_240 0.0691161122 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_031321_020 0.073359001 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
4 Hb_007221_020 0.0768881612 - - FAD-binding domain-containing family protein [Populus trichocarpa]
5 Hb_005276_140 0.0797418437 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019516_010 0.080564193 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
7 Hb_004453_160 0.0884571427 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005977_080 0.090246346 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
9 Hb_000134_130 0.0909148901 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
10 Hb_007922_030 0.091946433 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
11 Hb_004007_050 0.0922558747 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
12 Hb_001021_120 0.0945649459 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
13 Hb_000072_230 0.0947106966 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
14 Hb_011310_170 0.0959333914 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_132840_190 0.0964979402 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_009486_050 0.1002710274 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
17 Hb_017434_010 0.1018079972 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
18 Hb_031022_030 0.1031465309 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
19 Hb_001519_090 0.104875075 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
20 Hb_001439_080 0.1053741693 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_170 Hb_000331_170 Hb_000031_240 Hb_000031_240 Hb_000331_170--Hb_000031_240 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_004453_160 Hb_004453_160 Hb_000331_170--Hb_004453_160 Hb_004007_050 Hb_004007_050 Hb_000031_240--Hb_004007_050 Hb_001958_040 Hb_001958_040 Hb_000031_240--Hb_001958_040 Hb_000031_240--Hb_004453_160 Hb_011310_170 Hb_011310_170 Hb_000031_240--Hb_011310_170 Hb_005977_080 Hb_005977_080 Hb_000031_240--Hb_005977_080 Hb_031321_020--Hb_007221_020 Hb_031022_030 Hb_031022_030 Hb_031321_020--Hb_031022_030 Hb_001021_120 Hb_001021_120 Hb_031321_020--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_031321_020--Hb_007922_030 Hb_000134_130 Hb_000134_130 Hb_031321_020--Hb_000134_130 Hb_007221_020--Hb_007922_030 Hb_007221_020--Hb_031022_030 Hb_132840_190 Hb_132840_190 Hb_007221_020--Hb_132840_190 Hb_007221_020--Hb_004453_160 Hb_007221_020--Hb_019516_010 Hb_005276_140--Hb_132840_190 Hb_000058_180 Hb_000058_180 Hb_005276_140--Hb_000058_180 Hb_000312_100 Hb_000312_100 Hb_005276_140--Hb_000312_100 Hb_001519_090 Hb_001519_090 Hb_005276_140--Hb_001519_090 Hb_005276_140--Hb_007221_020 Hb_019516_010--Hb_000134_130 Hb_002894_060 Hb_002894_060 Hb_019516_010--Hb_002894_060 Hb_019516_010--Hb_031321_020 Hb_019516_010--Hb_001958_040 Hb_019516_010--Hb_004007_050 Hb_004453_160--Hb_004007_050 Hb_004453_160--Hb_132840_190 Hb_004128_150 Hb_004128_150 Hb_004453_160--Hb_004128_150 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00710618 0.302199 6.9734 5.13283 0.0133013 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0322427 0.0253719 0.0484495 0.0553814 2.94463

CAGE analysis