Hb_000331_250

Information

Type -
Description -
Location Contig331: 216550-219258
Sequence    

Annotation

kegg
ID vvi:100250743
description brain protein 44-like protein
nr
ID XP_002283422.1
description PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
swissprot
ID Q949R9
description Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana GN=MPC1 PE=3 SV=1
trembl
ID A5AH05
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01780 PE=4 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial pyruvate carrier 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34779: 216593-219242
cDNA
(Sanger)
(ID:Location)		 026_E11.ab1: 216599-219099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_250 0.0 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
2 Hb_004934_030 0.0892506948 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
3 Hb_001269_640 0.0908008263 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
4 Hb_005773_060 0.097043202 - - defender against cell death, putative [Ricinus communis]
5 Hb_000000_360 0.1030999774 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
6 Hb_003544_020 0.1043566343 - - PREDICTED: elongin-A [Jatropha curcas]
7 Hb_121937_010 0.1062056588 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
8 Hb_002811_260 0.1064094262 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
9 Hb_001221_320 0.1066674794 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_000649_230 0.1069845466 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
11 Hb_032264_120 0.1073097831 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
12 Hb_008686_080 0.1077964615 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
13 Hb_000003_600 0.1098217884 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
14 Hb_000805_120 0.1104150468 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
15 Hb_002374_570 0.1114984089 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
16 Hb_000000_210 0.1117229465 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
17 Hb_001195_480 0.1125622871 - - cop9 complex subunit, putative [Ricinus communis]
18 Hb_003363_110 0.112714595 - - protein with unknown function [Ricinus communis]
19 Hb_001662_070 0.1127176366 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
20 Hb_010315_060 0.1143405563 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_250 Hb_000331_250 Hb_004934_030 Hb_004934_030 Hb_000331_250--Hb_004934_030 Hb_001269_640 Hb_001269_640 Hb_000331_250--Hb_001269_640 Hb_005773_060 Hb_005773_060 Hb_000331_250--Hb_005773_060 Hb_000000_360 Hb_000000_360 Hb_000331_250--Hb_000000_360 Hb_003544_020 Hb_003544_020 Hb_000331_250--Hb_003544_020 Hb_121937_010 Hb_121937_010 Hb_000331_250--Hb_121937_010 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_000926_180 Hb_000926_180 Hb_001269_640--Hb_000926_180 Hb_010315_060 Hb_010315_060 Hb_001269_640--Hb_010315_060 Hb_000422_030 Hb_000422_030 Hb_001269_640--Hb_000422_030 Hb_027043_020 Hb_027043_020 Hb_001269_640--Hb_027043_020 Hb_001195_260 Hb_001195_260 Hb_001269_640--Hb_001195_260 Hb_002811_260 Hb_002811_260 Hb_005773_060--Hb_002811_260 Hb_005773_060--Hb_003544_020 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_000186_190 Hb_000186_190 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_140833_010 Hb_140833_010 Hb_000000_360--Hb_140833_010 Hb_000000_360--Hb_000694_040 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_000000_360--Hb_010315_060 Hb_002820_110 Hb_002820_110 Hb_000000_360--Hb_002820_110 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_003544_020--Hb_000186_190 Hb_003544_020--Hb_002811_260 Hb_008686_080 Hb_008686_080 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_000690_160 Hb_000690_160 Hb_121937_010--Hb_000690_160 Hb_000347_540 Hb_000347_540 Hb_121937_010--Hb_000347_540 Hb_001136_070 Hb_001136_070 Hb_121937_010--Hb_001136_070 Hb_171376_010 Hb_171376_010 Hb_121937_010--Hb_171376_010 Hb_121937_010--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_121937_010--Hb_002374_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.534 28.127 110.361 76.3972 57.1694 65.4355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.935 103.788 51.9305 34.5331 22.4626

CAGE analysis