Hb_000331_260

Information

Type -
Description -
Location Contig331: 219905-225772
Sequence    

Annotation

kegg
ID rcu:RCOM_1506850
description WD-repeat protein, putative
nr
ID XP_012079875.1
description PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
swissprot
ID Q58D06
description WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1
trembl
ID A0A067KGH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11325 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transducin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_260 0.0 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
2 Hb_156279_020 0.0395974785 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_004143_060 0.0461132311 - - DNA binding protein, putative [Ricinus communis]
4 Hb_005269_070 0.0483224709 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
5 Hb_000215_110 0.0573636189 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
6 Hb_001902_030 0.0603253621 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
7 Hb_011037_030 0.0619980635 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
8 Hb_001971_010 0.0623333495 - - F23N19.4 [Arabidopsis thaliana]
9 Hb_007390_010 0.0632796204 - - catalytic, putative [Ricinus communis]
10 Hb_002235_250 0.0636236796 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
11 Hb_002154_100 0.0644400851 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
12 Hb_000035_180 0.065530721 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
13 Hb_000696_330 0.0679708858 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
14 Hb_007479_040 0.0684127484 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004841_010 0.068855292 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
16 Hb_000156_010 0.0691291758 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
17 Hb_002169_040 0.0692444004 - - unknown [Populus trichocarpa]
18 Hb_054865_150 0.0698216399 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
19 Hb_000883_020 0.0700530833 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
20 Hb_008847_030 0.0706669077 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_260 Hb_000331_260 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_156279_020--Hb_005269_070 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_016172_020 Hb_016172_020 Hb_004143_060--Hb_016172_020 Hb_007390_010 Hb_007390_010 Hb_004143_060--Hb_007390_010 Hb_004143_060--Hb_011037_030 Hb_000696_330 Hb_000696_330 Hb_004143_060--Hb_000696_330 Hb_004143_060--Hb_000215_110 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_002263_020 Hb_002263_020 Hb_001902_030--Hb_002263_020 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_004109_080 Hb_004109_080 Hb_001902_030--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_011037_030--Hb_000156_010 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_054865_150 Hb_054865_150 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99467 4.08713 5.32062 5.40633 5.67345 8.03466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.18021 7.99782 7.18966 5.63608 6.95896

CAGE analysis