Hb_000331_340

Information

Type -
Description -
Location Contig331: 277302-288304
Sequence    

Annotation

kegg
ID rcu:RCOM_1507070
description hypothetical protein
nr
ID XP_012079888.1
description PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11335 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nucleic acid- ob-fold-like protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34792: 277360-288066
cDNA
(Sanger)
(ID:Location)		 022_A15.ab1: 287432-288066 , 026_H21.ab1: 287371-288066 , 030_G06.ab1: 287310-288066 , 049_J17.ab1: 287390-288066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_340 0.0 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
2 Hb_002447_050 0.0959947515 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_003683_030 0.1035994258 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
4 Hb_000302_190 0.1099309985 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
5 Hb_003529_140 0.1140872797 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
6 Hb_004871_010 0.1141170664 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
7 Hb_000418_090 0.115089999 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000453_230 0.1176270137 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_004837_020 0.1217893647 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
10 Hb_004837_210 0.1225133177 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
11 Hb_000313_290 0.1243305275 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_006911_070 0.1244774297 - - 50S ribosomal protein L1p, putative [Ricinus communis]
13 Hb_003376_390 0.1246757481 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
14 Hb_002928_030 0.1258024962 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
15 Hb_003071_030 0.1261456526 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
16 Hb_031042_060 0.12616236 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_006569_040 0.1275087931 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
18 Hb_000260_710 0.127674972 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
19 Hb_001789_160 0.129187082 - - PREDICTED: putative transporter arsB [Jatropha curcas]
20 Hb_000836_350 0.1320818148 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_340 Hb_000331_340 Hb_002447_050 Hb_002447_050 Hb_000331_340--Hb_002447_050 Hb_003683_030 Hb_003683_030 Hb_000331_340--Hb_003683_030 Hb_000302_190 Hb_000302_190 Hb_000331_340--Hb_000302_190 Hb_003529_140 Hb_003529_140 Hb_000331_340--Hb_003529_140 Hb_004871_010 Hb_004871_010 Hb_000331_340--Hb_004871_010 Hb_000418_090 Hb_000418_090 Hb_000331_340--Hb_000418_090 Hb_000453_230 Hb_000453_230 Hb_002447_050--Hb_000453_230 Hb_001663_130 Hb_001663_130 Hb_002447_050--Hb_001663_130 Hb_029552_020 Hb_029552_020 Hb_002447_050--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_002447_050--Hb_000529_130 Hb_000300_560 Hb_000300_560 Hb_002447_050--Hb_000300_560 Hb_000749_200 Hb_000749_200 Hb_003683_030--Hb_000749_200 Hb_001689_050 Hb_001689_050 Hb_003683_030--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_003683_030--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_003683_030--Hb_004837_210 Hb_001250_040 Hb_001250_040 Hb_003683_030--Hb_001250_040 Hb_001953_100 Hb_001953_100 Hb_003683_030--Hb_001953_100 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_001279_090 Hb_001279_090 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_006569_040 Hb_006569_040 Hb_003529_140--Hb_006569_040 Hb_010174_090 Hb_010174_090 Hb_003529_140--Hb_010174_090 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_000555_020 Hb_000555_020 Hb_003529_140--Hb_000555_020 Hb_000311_120 Hb_000311_120 Hb_003529_140--Hb_000311_120 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_000313_290 Hb_000313_290 Hb_000418_090--Hb_000313_290 Hb_001624_040 Hb_001624_040 Hb_000418_090--Hb_001624_040 Hb_000418_090--Hb_000453_230 Hb_000010_130 Hb_000010_130 Hb_000418_090--Hb_000010_130 Hb_000418_090--Hb_001250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0266 22.0366 59.6399 15.4625 17.9912 9.01584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.78192 8.1675 3.04214 13.3476 54.0961

CAGE analysis