Hb_000331_420

Information

Type -
Description -
Location Contig331: 343844-347342
Sequence    

Annotation

kegg
ID rcu:RCOM_1507310
description nucleoside diphosphate kinase, putative (EC:2.7.4.6)
nr
ID XP_012079896.1
description PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q852S5
description Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1
trembl
ID A0A067K7F6
description Nucleoside diphosphate kinase OS=Jatropha curcas GN=JCGZ_11344 PE=3 SV=1
Gene Ontology
ID GO:0004550
description nucleoside diphosphate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34798: 343900-347413
cDNA
(Sanger)
(ID:Location)		 011_J22.ab1: 343900-346955 , 035_J02.ab1: 343900-346908 , 041_L10.ab1: 343907-345657 , 045_P04.ab1: 343907-346928

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_420 0.0 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
2 Hb_000331_570 0.0981039748 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
3 Hb_000189_130 0.1160462769 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
4 Hb_005214_170 0.1174907973 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
5 Hb_009851_010 0.1175792227 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
6 Hb_002871_040 0.1321104696 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
7 Hb_000152_180 0.1323962361 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
8 Hb_006775_120 0.1331811083 - - exonuclease-like protein [Oryza sativa Japonica Group]
9 Hb_001623_500 0.1371880664 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
10 Hb_017193_010 0.1389952767 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
11 Hb_068194_010 0.1395738161 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
12 Hb_000820_140 0.1403763432 - - histone H4 [Zea mays]
13 Hb_000442_040 0.1432890904 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
14 Hb_007199_020 0.1460066167 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
15 Hb_000350_050 0.1467434003 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
16 Hb_008375_030 0.1473967845 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
17 Hb_000676_020 0.1477054456 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
18 Hb_000398_170 0.1481875482 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
19 Hb_021732_010 0.1502613282 - - biotin carboxylase [Vernicia fordii]
20 Hb_001102_050 0.1505024627 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_420 Hb_000331_420 Hb_000331_570 Hb_000331_570 Hb_000331_420--Hb_000331_570 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_005214_170 Hb_005214_170 Hb_000331_420--Hb_005214_170 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_002871_040 Hb_002871_040 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_000331_570--Hb_002871_040 Hb_002627_040 Hb_002627_040 Hb_000331_570--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_000331_570--Hb_101334_020 Hb_001390_100 Hb_001390_100 Hb_000331_570--Hb_001390_100 Hb_070624_010 Hb_070624_010 Hb_000331_570--Hb_070624_010 Hb_000307_070 Hb_000307_070 Hb_000189_130--Hb_000307_070 Hb_001009_140 Hb_001009_140 Hb_000189_130--Hb_001009_140 Hb_000589_170 Hb_000589_170 Hb_000189_130--Hb_000589_170 Hb_001587_040 Hb_001587_040 Hb_000189_130--Hb_001587_040 Hb_001322_230 Hb_001322_230 Hb_000189_130--Hb_001322_230 Hb_000330_090 Hb_000330_090 Hb_005214_170--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_005214_170--Hb_007199_020 Hb_005946_150 Hb_005946_150 Hb_005214_170--Hb_005946_150 Hb_000193_260 Hb_000193_260 Hb_005214_170--Hb_000193_260 Hb_001804_090 Hb_001804_090 Hb_005214_170--Hb_001804_090 Hb_027402_020 Hb_027402_020 Hb_009851_010--Hb_027402_020 Hb_000676_020 Hb_000676_020 Hb_009851_010--Hb_000676_020 Hb_068194_010 Hb_068194_010 Hb_009851_010--Hb_068194_010 Hb_002498_160 Hb_002498_160 Hb_009851_010--Hb_002498_160 Hb_001102_050 Hb_001102_050 Hb_009851_010--Hb_001102_050 Hb_003835_110 Hb_003835_110 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_000312_070 Hb_000312_070 Hb_000152_180--Hb_000312_070 Hb_011476_030 Hb_011476_030 Hb_000152_180--Hb_011476_030 Hb_005332_080 Hb_005332_080 Hb_000152_180--Hb_005332_080 Hb_009771_060 Hb_009771_060 Hb_000152_180--Hb_009771_060 Hb_001541_110 Hb_001541_110 Hb_000152_180--Hb_001541_110 Hb_007217_010 Hb_007217_010 Hb_000152_180--Hb_007217_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89289 2.4339 18.9217 6.05086 0.963077 2.4536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96226 3.1535 3.17812 7.11492 8.45805

CAGE analysis