Hb_000331_470

Information

Type -
Description -
Location Contig331: 397763-399968
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09420g
description POPTRDRAFT_773128; GLUCOSE HYPERSENSITIVE 1 family protein
nr
ID XP_011040428.1
description PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
swissprot
ID B8GPU0
description 30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=rpsU PE=3 SV=1
trembl
ID B9I3K9
description GLUCOSE HYPERSENSITIVE 1 family protein OS=Populus trichocarpa GN=POPTR_0012s09420g PE=3 SV=2
Gene Ontology
ID GO:0005840
description ribosomal protein s21 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34807: 397710-399502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_470 0.0 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
2 Hb_000525_020 0.0726769968 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_003787_010 0.0767381774 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
4 Hb_006153_110 0.077282596 - - dimethylaniline monooxygenase, putative [Ricinus communis]
5 Hb_001863_430 0.0778480998 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
6 Hb_010098_050 0.0793682313 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
7 Hb_000001_060 0.0804743375 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
8 Hb_000030_290 0.0837520892 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
9 Hb_000217_030 0.0838996346 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
10 Hb_001476_080 0.0853428998 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
11 Hb_007894_060 0.0870696884 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
12 Hb_001691_140 0.088100003 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
13 Hb_000342_100 0.08858584 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
14 Hb_062226_140 0.0891835891 - - PREDICTED: protein NEDD1 [Jatropha curcas]
15 Hb_003151_040 0.089548678 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
16 Hb_001616_040 0.0909676331 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
17 Hb_153544_010 0.0910949639 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
18 Hb_000152_500 0.0916772623 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
19 Hb_001341_150 0.0917429391 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
20 Hb_000529_030 0.0930780749 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_470 Hb_000331_470 Hb_000525_020 Hb_000525_020 Hb_000331_470--Hb_000525_020 Hb_003787_010 Hb_003787_010 Hb_000331_470--Hb_003787_010 Hb_006153_110 Hb_006153_110 Hb_000331_470--Hb_006153_110 Hb_001863_430 Hb_001863_430 Hb_000331_470--Hb_001863_430 Hb_010098_050 Hb_010098_050 Hb_000331_470--Hb_010098_050 Hb_000001_060 Hb_000001_060 Hb_000331_470--Hb_000001_060 Hb_004871_020 Hb_004871_020 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_000525_020--Hb_001863_430 Hb_000684_270 Hb_000684_270 Hb_000525_020--Hb_000684_270 Hb_000525_020--Hb_003787_010 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_000010_190 Hb_000010_190 Hb_006153_110--Hb_000010_190 Hb_006153_110--Hb_000217_030 Hb_006153_110--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_006153_110--Hb_007304_090 Hb_011512_070 Hb_011512_070 Hb_006153_110--Hb_011512_070 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_006615_240 Hb_006615_240 Hb_010098_050--Hb_006615_240 Hb_001341_150 Hb_001341_150 Hb_010098_050--Hb_001341_150 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_004143_150 Hb_004143_150 Hb_000001_060--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_000001_060--Hb_004899_370 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_003151_040 Hb_003151_040 Hb_000001_060--Hb_003151_040 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03073 1.33476 1.38221 1.30979 0.89141 1.16458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79334 3.19496 1.26944 1.49295 0.80528

CAGE analysis