Hb_000331_480

Information

Type transcription factor
Description TF Family: GNAT
Location Contig331: 399649-408195
Sequence    

Annotation

kegg
ID rcu:RCOM_1507380
description Elongator complex protein, putative (EC:2.3.1.48)
nr
ID XP_012079906.1
description PREDICTED: elongator complex protein 3 [Jatropha curcas]
swissprot
ID Q93ZR1
description Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1
trembl
ID A0A067KGJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11350 PE=4 SV=1
Gene Ontology
ID GO:0008080
description elongator complex protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34808: 403176-408222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_480 0.0 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
2 Hb_001034_020 0.0705029946 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
3 Hb_025048_040 0.0708577352 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
4 Hb_002675_190 0.0716248593 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000212_280 0.0727249832 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
6 Hb_012760_200 0.0779618795 - - protein phsophatase-2a, putative [Ricinus communis]
7 Hb_153547_010 0.0779812984 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
8 Hb_001439_180 0.078312016 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
9 Hb_000076_290 0.0784778419 - - translation factor sui1, putative [Ricinus communis]
10 Hb_004032_350 0.0820829415 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
11 Hb_005295_040 0.08338332 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
12 Hb_013753_010 0.0851841386 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
13 Hb_001408_090 0.086844954 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
14 Hb_000573_040 0.088468017 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
15 Hb_117950_020 0.0891063473 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
16 Hb_001009_050 0.090619964 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
17 Hb_002725_070 0.0912252951 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
18 Hb_001431_070 0.0921187523 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
19 Hb_042083_070 0.0932916724 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
20 Hb_004931_040 0.0950000307 - - splicing factor-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000331_480 Hb_000331_480 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_025048_040 Hb_025048_040 Hb_000331_480--Hb_025048_040 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000212_280 Hb_000212_280 Hb_000331_480--Hb_000212_280 Hb_012760_200 Hb_012760_200 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_001034_020--Hb_002675_190 Hb_025048_040--Hb_000212_280 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_025048_040--Hb_012760_200 Hb_005028_010 Hb_005028_010 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050 Hb_004931_040 Hb_004931_040 Hb_002675_190--Hb_004931_040 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_002675_190--Hb_001439_180 Hb_002675_190--Hb_000212_280 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_005000_270 Hb_005000_270 Hb_000212_280--Hb_005000_270 Hb_000212_280--Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_013753_010 Hb_013753_010 Hb_012760_200--Hb_013753_010 Hb_012760_200--Hb_000212_280 Hb_117950_020 Hb_117950_020 Hb_153547_010--Hb_117950_020 Hb_000317_440 Hb_000317_440 Hb_153547_010--Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_153547_010--Hb_000631_150 Hb_004724_360 Hb_004724_360 Hb_153547_010--Hb_004724_360 Hb_005295_040 Hb_005295_040 Hb_153547_010--Hb_005295_040 Hb_000318_140 Hb_000318_140 Hb_153547_010--Hb_000318_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.671 56.5417 13.073 13.1554 141.74 154.679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1236 22.9561 50.351 48.1471 9.00955

CAGE analysis