Hb_000331_500

Information

Type transcription factor
Description TF Family: C2H2
Location Contig331: 411930-412332
Sequence    

Annotation

kegg
ID rcu:RCOM_1507400
description nucleic acid binding protein, putative
nr
ID XP_002511255.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAN0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1507400 PE=4 SV=1
Gene Ontology
ID GO:0046872
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_500 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_002141_020 0.138158489 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
3 Hb_136765_010 0.1494340541 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
4 Hb_000107_140 0.1732532624 - - -
5 Hb_003376_170 0.1782513124 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
6 Hb_004662_010 0.179924686 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
7 Hb_042404_010 0.1980012996 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
8 Hb_012867_010 0.1988412345 - - Vacuolar protein sorting 45 [Theobroma cacao]
9 Hb_012305_040 0.2041759808 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
10 Hb_144898_010 0.208570242 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_021576_060 0.2116998411 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004241_040 0.2150460803 - - -
13 Hb_002904_090 0.2182316636 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
14 Hb_004607_120 0.2267798451 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
15 Hb_000622_100 0.2274125971 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
16 Hb_073367_010 0.2299800895 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
17 Hb_002863_010 0.2391501057 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
18 Hb_005217_020 0.2397980602 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
19 Hb_181320_010 0.2402529095 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
20 Hb_002639_070 0.2409665253 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_500 Hb_000331_500 Hb_002141_020 Hb_002141_020 Hb_000331_500--Hb_002141_020 Hb_136765_010 Hb_136765_010 Hb_000331_500--Hb_136765_010 Hb_000107_140 Hb_000107_140 Hb_000331_500--Hb_000107_140 Hb_003376_170 Hb_003376_170 Hb_000331_500--Hb_003376_170 Hb_004662_010 Hb_004662_010 Hb_000331_500--Hb_004662_010 Hb_042404_010 Hb_042404_010 Hb_000331_500--Hb_042404_010 Hb_002141_020--Hb_136765_010 Hb_002141_020--Hb_004662_010 Hb_012867_010 Hb_012867_010 Hb_002141_020--Hb_012867_010 Hb_004109_060 Hb_004109_060 Hb_002141_020--Hb_004109_060 Hb_004241_040 Hb_004241_040 Hb_002141_020--Hb_004241_040 Hb_068922_010 Hb_068922_010 Hb_136765_010--Hb_068922_010 Hb_136765_010--Hb_012867_010 Hb_010068_100 Hb_010068_100 Hb_136765_010--Hb_010068_100 Hb_136765_010--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_000107_140--Hb_144898_010 Hb_000622_100 Hb_000622_100 Hb_000107_140--Hb_000622_100 Hb_073367_010 Hb_073367_010 Hb_000107_140--Hb_073367_010 Hb_011174_010 Hb_011174_010 Hb_000107_140--Hb_011174_010 Hb_004117_180 Hb_004117_180 Hb_000107_140--Hb_004117_180 Hb_004607_120 Hb_004607_120 Hb_000107_140--Hb_004607_120 Hb_011525_020 Hb_011525_020 Hb_003376_170--Hb_011525_020 Hb_064201_010 Hb_064201_010 Hb_003376_170--Hb_064201_010 Hb_005217_020 Hb_005217_020 Hb_003376_170--Hb_005217_020 Hb_005016_150 Hb_005016_150 Hb_003376_170--Hb_005016_150 Hb_000352_130 Hb_000352_130 Hb_003376_170--Hb_000352_130 Hb_000454_030 Hb_000454_030 Hb_003376_170--Hb_000454_030 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004662_010--Hb_004241_040 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_004662_010--Hb_005217_020 Hb_000445_330 Hb_000445_330 Hb_042404_010--Hb_000445_330 Hb_029982_010 Hb_029982_010 Hb_042404_010--Hb_029982_010 Hb_042404_010--Hb_136765_010 Hb_086859_010 Hb_086859_010 Hb_042404_010--Hb_086859_010 Hb_070820_010 Hb_070820_010 Hb_042404_010--Hb_070820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7952 0.620768 0.116128 1.10081 2.5712 4.31179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55344 1.955 0 0 0

CAGE analysis