Hb_000331_550

Information

Type transcription factor
Description TF Family: C3H
Location Contig331: 444370-450030
Sequence    

Annotation

kegg
ID rcu:RCOM_1507490
description nucleic acid binding protein, putative
nr
ID XP_012079920.1
description PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
swissprot
ID Q9STM4
description Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1
trembl
ID A0A067KGL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11360 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 67

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34812: 444386-450034 , PASA_asmbl_34814: 450761-454913
cDNA
(Sanger)
(ID:Location)		 043_E06.ab1: 449359-450034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_550 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
2 Hb_001163_050 0.0450339138 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
3 Hb_000373_070 0.0540068235 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
4 Hb_156279_020 0.0559584858 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_011995_010 0.0581484326 - - dc50, putative [Ricinus communis]
6 Hb_015934_040 0.0584857277 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
7 Hb_002754_010 0.0589623097 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
8 Hb_000580_180 0.0589979551 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002078_350 0.0599122239 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
10 Hb_008725_230 0.0642454178 - - PREDICTED: CTP synthase [Jatropha curcas]
11 Hb_001359_050 0.0643835313 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000732_010 0.0646079012 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
13 Hb_005779_060 0.0646179532 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_002046_180 0.0657851134 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
15 Hb_065525_040 0.0658991897 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
16 Hb_000757_060 0.0664612558 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
17 Hb_001511_060 0.0668841391 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
18 Hb_005271_220 0.0671864487 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
19 Hb_000684_380 0.0674861762 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
20 Hb_003001_080 0.0678274054 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_550 Hb_000331_550 Hb_001163_050 Hb_001163_050 Hb_000331_550--Hb_001163_050 Hb_000373_070 Hb_000373_070 Hb_000331_550--Hb_000373_070 Hb_156279_020 Hb_156279_020 Hb_000331_550--Hb_156279_020 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_002754_010 Hb_002754_010 Hb_000331_550--Hb_002754_010 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_156279_020--Hb_002078_350 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_015934_040--Hb_001248_060 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0527 22.1447 21.2857 21.1582 20.092 21.4866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7632 29.7731 28.3399 21.2495 17.923

CAGE analysis