Hb_000331_570

Information

Type -
Description -
Location Contig331: 460733-466162
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10030g
description POPTRDRAFT_575282; endonuclease/exonuclease/phosphatase family protein
nr
ID XP_012079922.1
description PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
swissprot
ID Q5XF07
description DNA-(apurinic or apyrimidinic site) lyase OS=Arabidopsis thaliana GN=APE1L PE=1 SV=1
trembl
ID A0A067K431
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11362 PE=4 SV=1
Gene Ontology
ID GO:0004518
description dna-(apurinic or apyrimidinic site) lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34817: 460747-466165 , PASA_asmbl_34818: 462299-462648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_570 0.0 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
2 Hb_000331_420 0.0981039748 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
3 Hb_002871_040 0.1071971726 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
4 Hb_002627_040 0.1090424202 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
5 Hb_101334_020 0.1102410986 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
6 Hb_001390_100 0.1111631321 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
7 Hb_070624_010 0.1146404025 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
8 Hb_000926_060 0.1169412613 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002486_060 0.1178561647 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
10 Hb_006775_120 0.1216317985 - - exonuclease-like protein [Oryza sativa Japonica Group]
11 Hb_017193_010 0.1223959382 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
12 Hb_029695_070 0.1226876196 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
13 Hb_003680_220 0.1256806602 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
14 Hb_003529_040 0.1257713593 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
15 Hb_001587_040 0.1258898908 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
16 Hb_002044_020 0.1273271438 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
17 Hb_000620_020 0.1274111396 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
18 Hb_005665_090 0.1279141932 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
19 Hb_005527_060 0.1296063482 - - malic enzyme, putative [Ricinus communis]
20 Hb_000230_530 0.1309612583 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000331_570 Hb_000331_570 Hb_000331_420 Hb_000331_420 Hb_000331_570--Hb_000331_420 Hb_002871_040 Hb_002871_040 Hb_000331_570--Hb_002871_040 Hb_002627_040 Hb_002627_040 Hb_000331_570--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_000331_570--Hb_101334_020 Hb_001390_100 Hb_001390_100 Hb_000331_570--Hb_001390_100 Hb_070624_010 Hb_070624_010 Hb_000331_570--Hb_070624_010 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_005214_170 Hb_005214_170 Hb_000331_420--Hb_005214_170 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_003835_110 Hb_003835_110 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002687_160 Hb_002687_160 Hb_002627_040--Hb_002687_160 Hb_000025_540 Hb_000025_540 Hb_002627_040--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002627_040--Hb_138585_030 Hb_002627_040--Hb_070624_010 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_101334_020--Hb_001390_100 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_000116_250 Hb_000116_250 Hb_001390_100--Hb_000116_250 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_000496_130 Hb_000496_130 Hb_001390_100--Hb_000496_130 Hb_001390_100--Hb_138585_030 Hb_000926_060 Hb_000926_060 Hb_070624_010--Hb_000926_060 Hb_000358_210 Hb_000358_210 Hb_070624_010--Hb_000358_210 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.868209 1.191 9.23752 3.44226 0.875183 1.11959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79524 0.941452 1.34366 3.66984 4.93976

CAGE analysis