Hb_000331_680

Information

Type -
Description -
Location Contig331: 514738-518422
Sequence    

Annotation

kegg
ID rcu:RCOM_1507860
description Protein bem46, putative
nr
ID XP_002511280.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5VST6
description Alpha/beta hydrolase domain-containing protein 17B OS=Homo sapiens GN=ABHD17B PE=2 SV=1
trembl
ID B9RAQ5
description Protein bem46, putative OS=Ricinus communis GN=RCOM_1507860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34831: 514982-518134 , PASA_asmbl_34832: 515493-515636 , PASA_asmbl_34833: 516620-516777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_680 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_000077_140 0.0547019356 - - structural constituent of cell wall, putative [Ricinus communis]
3 Hb_005653_090 0.055869095 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
4 Hb_003464_090 0.0580787097 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
5 Hb_000069_310 0.0646143045 - - ubiquitin ligase [Cucumis melo subsp. melo]
6 Hb_002890_290 0.0652068734 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
7 Hb_000327_270 0.0656066838 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
8 Hb_003747_100 0.0660622841 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000915_180 0.0667148848 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
10 Hb_003849_110 0.0669756794 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
11 Hb_000861_080 0.0675673087 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_000803_070 0.0682089994 - - PREDICTED: protein TRAUCO [Jatropha curcas]
13 Hb_005489_020 0.0684373572 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000699_030 0.0689254866 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
15 Hb_000732_010 0.0719932106 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
16 Hb_000886_050 0.0719970735 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
17 Hb_003030_060 0.0721133543 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
18 Hb_007163_120 0.0728903429 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
19 Hb_003001_080 0.0745941792 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
20 Hb_000603_280 0.0757516891 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_680 Hb_000331_680 Hb_000077_140 Hb_000077_140 Hb_000331_680--Hb_000077_140 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_003464_090 Hb_003464_090 Hb_000331_680--Hb_003464_090 Hb_000069_310 Hb_000069_310 Hb_000331_680--Hb_000069_310 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270 Hb_000603_280 Hb_000603_280 Hb_000077_140--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_000077_140--Hb_002843_120 Hb_003504_030 Hb_003504_030 Hb_000077_140--Hb_003504_030 Hb_000077_140--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_000077_140--Hb_000915_180 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_005653_090--Hb_003464_090 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_005653_090--Hb_000603_280 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_013358_040 Hb_013358_040 Hb_000069_310--Hb_013358_040 Hb_000069_310--Hb_003849_110 Hb_000069_310--Hb_000915_180 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_001227_030 Hb_001227_030 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_152175_010 Hb_152175_010 Hb_002890_290--Hb_152175_010 Hb_002890_290--Hb_003464_090 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_000327_270--Hb_003504_030 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1265 27.5251 19.8197 16.6034 14.8595 17.2876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7264 16.9227 20.1662 15.889 17.6762

CAGE analysis