Hb_000333_090

Information

Type -
Description -
Location Contig333: 59784-63813
Sequence    

Annotation

kegg
ID cit:102617374
description uncharacterized LOC102617374
nr
ID XP_006474741.1
description PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V4UIR0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009634mg PE=4 SV=1
Gene Ontology
ID GO:0009536
description obp3-responsive gene 4 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34924: 60848-63689 , PASA_asmbl_34925: 61392-63657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000333_090 0.0 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
2 Hb_084849_020 0.0820831415 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_010172_030 0.0864135466 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
4 Hb_001369_050 0.0872898262 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
5 Hb_000362_210 0.0894755821 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
6 Hb_002214_050 0.0901183899 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
7 Hb_100777_010 0.0912332155 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
8 Hb_010344_040 0.0934058943 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
9 Hb_014720_080 0.0937678841 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
10 Hb_003086_100 0.0941821985 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
11 Hb_000221_150 0.0947379349 - - -
12 Hb_000045_190 0.0949931616 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
13 Hb_003175_040 0.0950115836 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
14 Hb_005686_110 0.0968693818 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
15 Hb_000120_750 0.0978213292 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
16 Hb_001437_220 0.0979022631 - - Transmembrane protein, putative [Ricinus communis]
17 Hb_005432_030 0.0979302537 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
18 Hb_000479_180 0.0980696877 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007021_020 0.0984395397 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
20 Hb_000922_270 0.0996426153 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000333_090 Hb_000333_090 Hb_084849_020 Hb_084849_020 Hb_000333_090--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000333_090--Hb_010172_030 Hb_001369_050 Hb_001369_050 Hb_000333_090--Hb_001369_050 Hb_000362_210 Hb_000362_210 Hb_000333_090--Hb_000362_210 Hb_002214_050 Hb_002214_050 Hb_000333_090--Hb_002214_050 Hb_100777_010 Hb_100777_010 Hb_000333_090--Hb_100777_010 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_084849_020--Hb_000362_210 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_001369_050--Hb_003050_230 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_100777_010--Hb_001235_070 Hb_100777_010--Hb_000362_210 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4699 12.0573 7.10555 12.5373 23.7407 48.5513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.9345 73.377 50.8948 18.2354 9.03144

CAGE analysis