Hb_000333_100

Information

Type -
Description -
Location Contig333: 72399-79103
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14420g
description tubulin-tyrosine ligase family protein
nr
ID XP_012077049.1
description PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
swissprot
ID Q3UDE2
description Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=2 SV=1
trembl
ID A0A067KNP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07486 PE=4 SV=1
Gene Ontology
ID GO:0009507
description tubulin--tyrosine ligase-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34926: 72393-72676 , PASA_asmbl_34928: 73007-73730 , PASA_asmbl_34929: 73797-74403 , PASA_asmbl_34930: 74483-79099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000333_100 0.0 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
2 Hb_006913_040 0.0710950138 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
3 Hb_007643_050 0.0838172005 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_031091_010 0.083981113 - - crooked neck protein, putative [Ricinus communis]
5 Hb_008695_120 0.0857558939 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
6 Hb_002374_350 0.0862452599 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
7 Hb_001019_170 0.0868998425 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
8 Hb_185679_010 0.0898744436 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
9 Hb_001829_010 0.09104901 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
10 Hb_002235_320 0.0927095723 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
11 Hb_007416_310 0.0953583478 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
12 Hb_000088_020 0.0957749381 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
13 Hb_007317_190 0.096215998 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
14 Hb_008714_020 0.0971179592 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
15 Hb_000236_370 0.0973306713 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
16 Hb_004225_130 0.0975613876 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
17 Hb_002942_160 0.0987082397 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_024990_010 0.0994379664 - - PREDICTED: la protein 1 [Jatropha curcas]
19 Hb_003935_030 0.1001135078 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
20 Hb_142439_010 0.1008312672 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]

Gene co-expression network

sample Hb_000333_100 Hb_000333_100 Hb_006913_040 Hb_006913_040 Hb_000333_100--Hb_006913_040 Hb_007643_050 Hb_007643_050 Hb_000333_100--Hb_007643_050 Hb_031091_010 Hb_031091_010 Hb_000333_100--Hb_031091_010 Hb_008695_120 Hb_008695_120 Hb_000333_100--Hb_008695_120 Hb_002374_350 Hb_002374_350 Hb_000333_100--Hb_002374_350 Hb_001019_170 Hb_001019_170 Hb_000333_100--Hb_001019_170 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_002475_160 Hb_002475_160 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_007643_050--Hb_031091_010 Hb_001158_220 Hb_001158_220 Hb_007643_050--Hb_001158_220 Hb_031091_010--Hb_008695_120 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_008695_120--Hb_003581_120 Hb_008695_120--Hb_000322_100 Hb_008695_120--Hb_001019_170 Hb_002400_180 Hb_002400_180 Hb_008695_120--Hb_002400_180 Hb_002942_160 Hb_002942_160 Hb_008695_120--Hb_002942_160 Hb_004225_130 Hb_004225_130 Hb_002374_350--Hb_004225_130 Hb_004037_030 Hb_004037_030 Hb_002374_350--Hb_004037_030 Hb_000160_220 Hb_000160_220 Hb_002374_350--Hb_000160_220 Hb_002411_120 Hb_002411_120 Hb_002374_350--Hb_002411_120 Hb_056196_050 Hb_056196_050 Hb_002374_350--Hb_056196_050 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_001019_170--Hb_003581_120 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5015 19.2924 9.99186 6.91817 24.6369 41.9667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.985 12.0589 8.62638 10.7564 4.48002

CAGE analysis