Hb_000333_110

Information

Type -
Description -
Location Contig333: 80664-88522
Sequence    

Annotation

kegg
ID rcu:RCOM_0711890
description hypothetical protein
nr
ID XP_002516274.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34931: 85336-85764 , PASA_asmbl_34932: 80687-85677 , PASA_asmbl_34936: 86813-88392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000333_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003528_030 0.0863949332 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
3 Hb_001405_210 0.0894283782 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
4 Hb_000477_050 0.1018795408 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
5 Hb_163175_010 0.1025599341 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
6 Hb_000331_090 0.1029706026 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
7 Hb_000019_190 0.1048086525 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
8 Hb_023313_040 0.1050882503 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
9 Hb_004064_040 0.1059696761 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
10 Hb_001633_080 0.1061580792 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
11 Hb_001009_320 0.1062533291 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
12 Hb_000352_300 0.1063327991 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
13 Hb_006002_040 0.1065478269 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
14 Hb_001227_120 0.1074834901 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
15 Hb_000184_070 0.1075462902 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
16 Hb_002014_010 0.109731906 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_122548_010 0.1109363513 - - acyl-CoA oxidase, putative [Ricinus communis]
18 Hb_000006_010 0.1110984445 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003671_010 0.1113159433 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
20 Hb_008616_050 0.1113272101 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]

Gene co-expression network

sample Hb_000333_110 Hb_000333_110 Hb_003528_030 Hb_003528_030 Hb_000333_110--Hb_003528_030 Hb_001405_210 Hb_001405_210 Hb_000333_110--Hb_001405_210 Hb_000477_050 Hb_000477_050 Hb_000333_110--Hb_000477_050 Hb_163175_010 Hb_163175_010 Hb_000333_110--Hb_163175_010 Hb_000331_090 Hb_000331_090 Hb_000333_110--Hb_000331_090 Hb_000019_190 Hb_000019_190 Hb_000333_110--Hb_000019_190 Hb_007481_010 Hb_007481_010 Hb_003528_030--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000120_280 Hb_000120_280 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_000207_150 Hb_000207_150 Hb_000331_090--Hb_000207_150 Hb_000331_090--Hb_001959_110 Hb_000331_090--Hb_163175_010 Hb_000331_090--Hb_001405_210 Hb_000720_040 Hb_000720_040 Hb_000331_090--Hb_000720_040 Hb_000107_230 Hb_000107_230 Hb_000331_090--Hb_000107_230 Hb_023313_040 Hb_023313_040 Hb_000019_190--Hb_023313_040 Hb_002014_010 Hb_002014_010 Hb_000019_190--Hb_002014_010 Hb_001227_120 Hb_001227_120 Hb_000019_190--Hb_001227_120 Hb_007007_040 Hb_007007_040 Hb_000019_190--Hb_007007_040 Hb_000019_190--Hb_007248_030 Hb_000019_190--Hb_163175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1112 3.17802 6.25874 8.92768 5.22542 4.74663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44734 5.64476 2.48623 7.25676 3.845

CAGE analysis