Hb_000334_010

Information

Type -
Description -
Location Contig334: 8656-14735
Sequence    

Annotation

kegg
ID rcu:RCOM_1254760
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_002525760.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID Q94AS9
description Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2
trembl
ID B9SIE1
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_1254760 PE=4 SV=1
Gene Ontology
ID GO:0005623
description cyclic nucleotide-gated ion channel 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_010 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_000307_150 0.0839521652 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
3 Hb_000116_090 0.0988234911 - - catalase [Hevea brasiliensis]
4 Hb_031069_040 0.1050921913 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_002799_060 0.1128775449 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
6 Hb_003299_060 0.1195884189 - - nitrate transporter, putative [Ricinus communis]
7 Hb_001604_100 0.1199760273 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
8 Hb_001892_080 0.1339396427 - - Clavata3/esr-related 16, putative [Theobroma cacao]
9 Hb_005433_020 0.1350636222 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
10 Hb_000834_170 0.1354766977 - - polygalacturonase, putative [Ricinus communis]
11 Hb_000027_110 0.1376059344 - - wall-associated kinase, putative [Ricinus communis]
12 Hb_005337_140 0.138339345 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
13 Hb_002010_030 0.1399323271 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_002307_120 0.1405727144 - - scab resistance family protein [Populus trichocarpa]
15 Hb_001269_030 0.1410309831 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
16 Hb_000227_180 0.1434703543 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
17 Hb_000668_180 0.1440075049 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
18 Hb_107373_010 0.1460142872 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
19 Hb_007253_030 0.1463476656 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
20 Hb_001546_170 0.1472457606 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000334_010 Hb_000334_010 Hb_000307_150 Hb_000307_150 Hb_000334_010--Hb_000307_150 Hb_000116_090 Hb_000116_090 Hb_000334_010--Hb_000116_090 Hb_031069_040 Hb_031069_040 Hb_000334_010--Hb_031069_040 Hb_002799_060 Hb_002799_060 Hb_000334_010--Hb_002799_060 Hb_003299_060 Hb_003299_060 Hb_000334_010--Hb_003299_060 Hb_001604_100 Hb_001604_100 Hb_000334_010--Hb_001604_100 Hb_000307_150--Hb_000116_090 Hb_001892_080 Hb_001892_080 Hb_000307_150--Hb_001892_080 Hb_002871_180 Hb_002871_180 Hb_000307_150--Hb_002871_180 Hb_001269_030 Hb_001269_030 Hb_000307_150--Hb_001269_030 Hb_007477_060 Hb_007477_060 Hb_000307_150--Hb_007477_060 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_000116_090--Hb_007477_060 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330 Hb_000373_160 Hb_000373_160 Hb_031069_040--Hb_000373_160 Hb_031069_040--Hb_001269_030 Hb_031069_040--Hb_000116_090 Hb_005337_140 Hb_005337_140 Hb_031069_040--Hb_005337_140 Hb_000668_180 Hb_000668_180 Hb_031069_040--Hb_000668_180 Hb_031069_040--Hb_000307_150 Hb_001257_110 Hb_001257_110 Hb_002799_060--Hb_001257_110 Hb_007253_030 Hb_007253_030 Hb_002799_060--Hb_007253_030 Hb_001775_100 Hb_001775_100 Hb_002799_060--Hb_001775_100 Hb_002799_060--Hb_001604_100 Hb_002799_060--Hb_031069_040 Hb_144045_010 Hb_144045_010 Hb_003299_060--Hb_144045_010 Hb_000027_110 Hb_000027_110 Hb_003299_060--Hb_000027_110 Hb_003299_060--Hb_000668_180 Hb_015824_010 Hb_015824_010 Hb_003299_060--Hb_015824_010 Hb_003299_060--Hb_000116_090 Hb_001604_100--Hb_000116_090 Hb_001604_100--Hb_000307_150 Hb_001604_100--Hb_001892_080 Hb_001604_100--Hb_002871_180 Hb_001604_100--Hb_007477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0168432 2.05355 4.40583 0.757287 0.024746 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191215 0.0150461 0 0.00597816 9.09929

CAGE analysis