Hb_000334_130

Information

Type -
Description -
Location Contig334: 118446-123807
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06390g
description POPTRDRAFT_1087856; hypothetical protein
nr
ID KDP43494.1
description hypothetical protein JCGZ_16781 [Jatropha curcas]
swissprot
ID Q84TI3
description Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2
trembl
ID A0A067LH22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16781 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein oberon 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35028: 118433-122099 , PASA_asmbl_35029: 119338-119823 , PASA_asmbl_35030: 122220-123762 , PASA_asmbl_35031: 123239-123850 , PASA_asmbl_35032: 123421-123654
cDNA
(Sanger)
(ID:Location)		 002_H20.ab1: 118472-119226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_130 0.0 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
2 Hb_001221_090 0.0728656464 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
3 Hb_002092_070 0.0731846563 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_002027_280 0.0790207923 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
5 Hb_001454_170 0.0805986736 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
6 Hb_004429_010 0.081770451 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_000352_070 0.0837444999 - - Potassium transporter, putative [Ricinus communis]
8 Hb_002284_170 0.0851921077 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
9 Hb_014720_020 0.0867215005 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
10 Hb_001259_110 0.0902586006 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
11 Hb_001904_030 0.091157933 - - PREDICTED: importin-5 [Jatropha curcas]
12 Hb_003895_020 0.0916593815 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
13 Hb_044653_020 0.0927212863 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
14 Hb_044486_040 0.0945347384 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
15 Hb_007818_030 0.0954632788 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
16 Hb_000635_200 0.0959451268 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
17 Hb_002687_090 0.0961816254 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
18 Hb_000243_130 0.0962608386 - - hypothetical protein M569_10795, partial [Genlisea aurea]
19 Hb_000751_140 0.0967681446 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
20 Hb_000949_020 0.096850475 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000334_130 Hb_000334_130 Hb_001221_090 Hb_001221_090 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_001454_170 Hb_001454_170 Hb_000334_130--Hb_001454_170 Hb_004429_010 Hb_004429_010 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_001221_090--Hb_002092_070 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_002027_280--Hb_004429_010 Hb_003124_160 Hb_003124_160 Hb_002027_280--Hb_003124_160 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_002027_280--Hb_000352_070 Hb_000949_020 Hb_000949_020 Hb_001454_170--Hb_000949_020 Hb_001454_170--Hb_001673_050 Hb_134362_010 Hb_134362_010 Hb_001454_170--Hb_134362_010 Hb_009486_080 Hb_009486_080 Hb_001454_170--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_001454_170--Hb_000573_060 Hb_004429_010--Hb_009252_050 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_000352_070--Hb_134362_010 Hb_000352_070--Hb_000949_020 Hb_000352_070--Hb_004429_010 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2287 39.1506 20.7934 23.064 26.8852 15.8066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27146 5.17392 8.00542 16.7016 20.9894

CAGE analysis