Hb_000334_150

Information

Type -
Description -
Location Contig334: 138649-139866
Sequence    

Annotation

kegg
ID rcu:RCOM_0174350
description hypothetical protein
nr
ID XP_002527480.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID B9SNB1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174350 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at3g06240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000165_160 0.0871793218 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
3 Hb_005183_120 0.0956220757 - - protein translocase, putative [Ricinus communis]
4 Hb_001014_040 0.1015121992 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
5 Hb_050514_010 0.1032039188 - - hypothetical protein 29 [Hevea brasiliensis]
6 Hb_003086_150 0.1067044139 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
7 Hb_002374_100 0.110340795 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
8 Hb_119600_070 0.1117699019 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
9 Hb_002799_110 0.1121435882 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
10 Hb_000676_150 0.1128760858 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
11 Hb_000445_040 0.1130248385 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
12 Hb_004225_080 0.1161746336 - - -
13 Hb_001726_020 0.1166978771 - - PREDICTED: endophilin-A1 [Jatropha curcas]
14 Hb_007904_260 0.1168570106 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
15 Hb_003540_030 0.1170370297 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
16 Hb_003053_020 0.1171065879 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
17 Hb_006711_060 0.1186060693 - - Tubulin beta-1 chain [Morus notabilis]
18 Hb_000827_050 0.1189676386 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
19 Hb_000815_070 0.1197131076 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
20 Hb_034380_020 0.1204293816 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000334_150 Hb_000334_150 Hb_000165_160 Hb_000165_160 Hb_000334_150--Hb_000165_160 Hb_005183_120 Hb_005183_120 Hb_000334_150--Hb_005183_120 Hb_001014_040 Hb_001014_040 Hb_000334_150--Hb_001014_040 Hb_050514_010 Hb_050514_010 Hb_000334_150--Hb_050514_010 Hb_003086_150 Hb_003086_150 Hb_000334_150--Hb_003086_150 Hb_002374_100 Hb_002374_100 Hb_000334_150--Hb_002374_100 Hb_002799_070 Hb_002799_070 Hb_000165_160--Hb_002799_070 Hb_001507_040 Hb_001507_040 Hb_000165_160--Hb_001507_040 Hb_000165_160--Hb_005183_120 Hb_000445_040 Hb_000445_040 Hb_000165_160--Hb_000445_040 Hb_000783_020 Hb_000783_020 Hb_000165_160--Hb_000783_020 Hb_000676_150 Hb_000676_150 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_005183_120--Hb_000783_020 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_001811_030 Hb_001811_030 Hb_001014_040--Hb_001811_030 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_001014_040--Hb_002374_100 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_000260_030 Hb_000260_030 Hb_050514_010--Hb_000260_030 Hb_000827_050 Hb_000827_050 Hb_050514_010--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_004109_170 Hb_004109_170 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_003086_150--Hb_000827_050 Hb_002799_110 Hb_002799_110 Hb_003086_150--Hb_002799_110 Hb_000236_040 Hb_000236_040 Hb_003086_150--Hb_000236_040 Hb_003086_150--Hb_050514_010 Hb_001314_070 Hb_001314_070 Hb_003086_150--Hb_001314_070 Hb_000529_170 Hb_000529_170 Hb_003086_150--Hb_000529_170 Hb_000976_430 Hb_000976_430 Hb_002374_100--Hb_000976_430 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34931 2.70751 7.99495 3.92858 3.79937 6.69003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92755 8.43343 17.8015 6.75483 6.75335

CAGE analysis