Hb_000334_200

Information

Type desease resistance
Description Gene Name: RVT_1
Location Contig334: 167544-172603
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012065611.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067L528
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16863 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_200 0.0 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000243_020 0.22670561 - - -
3 Hb_181975_010 0.2341621147 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
4 Hb_002326_070 0.240925655 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
5 Hb_097433_020 0.249000484 - - ATP-binding cassette transporter, putative [Ricinus communis]
6 Hb_002205_100 0.2538556877 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001396_170 0.2564742406 - - unnamed protein product [Vitis vinifera]
8 Hb_007978_020 0.2606112649 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
9 Hb_001584_220 0.2629233408 - - galactinol synthase [Manihot esculenta]
10 Hb_001907_100 0.2630654429 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
11 Hb_090459_010 0.2735745435 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
12 Hb_000002_060 0.2750018275 - - BnaA03g50800D [Brassica napus]
13 Hb_001114_230 0.2805374977 - - -
14 Hb_116685_010 0.2820197673 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_000976_380 0.2826088589 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
16 Hb_054649_020 0.2870897613 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
17 Hb_002737_020 0.287748399 - - metallothionein [Bruguiera gymnorhiza]
18 Hb_023647_040 0.2893581121 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_001565_120 0.294261231 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
20 Hb_017651_010 0.3024344794 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000334_200 Hb_000334_200 Hb_000243_020 Hb_000243_020 Hb_000334_200--Hb_000243_020 Hb_181975_010 Hb_181975_010 Hb_000334_200--Hb_181975_010 Hb_002326_070 Hb_002326_070 Hb_000334_200--Hb_002326_070 Hb_097433_020 Hb_097433_020 Hb_000334_200--Hb_097433_020 Hb_002205_100 Hb_002205_100 Hb_000334_200--Hb_002205_100 Hb_001396_170 Hb_001396_170 Hb_000334_200--Hb_001396_170 Hb_076038_010 Hb_076038_010 Hb_000243_020--Hb_076038_010 Hb_001277_160 Hb_001277_160 Hb_000243_020--Hb_001277_160 Hb_000243_020--Hb_002326_070 Hb_000932_080 Hb_000932_080 Hb_000243_020--Hb_000932_080 Hb_000243_020--Hb_001396_170 Hb_007257_050 Hb_007257_050 Hb_181975_010--Hb_007257_050 Hb_001907_100 Hb_001907_100 Hb_181975_010--Hb_001907_100 Hb_000003_390 Hb_000003_390 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_007978_020 Hb_007978_020 Hb_181975_010--Hb_007978_020 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_080147_080 Hb_080147_080 Hb_002326_070--Hb_080147_080 Hb_079733_010 Hb_079733_010 Hb_002326_070--Hb_079733_010 Hb_002326_070--Hb_181975_010 Hb_005464_030 Hb_005464_030 Hb_002326_070--Hb_005464_030 Hb_000834_240 Hb_000834_240 Hb_002326_070--Hb_000834_240 Hb_002326_070--Hb_001907_100 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_005715_020 Hb_005715_020 Hb_097433_020--Hb_005715_020 Hb_002737_020 Hb_002737_020 Hb_097433_020--Hb_002737_020 Hb_018118_020 Hb_018118_020 Hb_097433_020--Hb_018118_020 Hb_050495_010 Hb_050495_010 Hb_097433_020--Hb_050495_010 Hb_116685_010 Hb_116685_010 Hb_002205_100--Hb_116685_010 Hb_090459_010 Hb_090459_010 Hb_002205_100--Hb_090459_010 Hb_001584_220 Hb_001584_220 Hb_002205_100--Hb_001584_220 Hb_002205_100--Hb_181975_010 Hb_002205_100--Hb_001907_100 Hb_062585_010 Hb_062585_010 Hb_001396_170--Hb_062585_010 Hb_001396_170--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_001396_170--Hb_000574_150 Hb_001396_170--Hb_007978_020 Hb_023647_040 Hb_023647_040 Hb_001396_170--Hb_023647_040 Hb_001396_170--Hb_000003_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0535891 0.150575 0.0114896 0.00699502 0.0046055 0.0760161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011151 0.0175508 0 0.00347613 0

CAGE analysis