Hb_000334_210

Information

Type -
Description -
Location Contig334: 174729-189126
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06460g
description POPTRDRAFT_722815; hypothetical protein
nr
ID XP_012065583.1
description PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
swissprot
ID Q38859
description DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1
trembl
ID A0A067LG12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16777 PE=4 SV=1
Gene Ontology
ID GO:0003677
description phd finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35040: 174696-177414 , PASA_asmbl_35042: 178343-188393 , PASA_asmbl_35045: 180708-181181
cDNA
(Sanger)
(ID:Location)		 005_A11.ab1: 174901-177414 , 031_C01.ab1: 174901-177414 , 040_J11.ab1: 174901-177414 , 041_J18.ab1: 174900-177414 , 051_J11.ab1: 174941-177414

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_210 0.0 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
2 Hb_000111_340 0.0602261536 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
3 Hb_003656_070 0.0644430188 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
4 Hb_001047_230 0.0684792594 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_003683_110 0.071079321 - - JHL10I11.3 [Jatropha curcas]
6 Hb_001616_040 0.0748811602 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
7 Hb_009711_020 0.0766422109 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
8 Hb_010672_060 0.0766739196 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
9 Hb_000920_110 0.0778477598 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
10 Hb_000307_090 0.0790795472 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
11 Hb_002110_120 0.0795472286 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
12 Hb_002431_050 0.0802142835 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
13 Hb_000030_290 0.0808538474 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
14 Hb_000574_480 0.0811491904 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
15 Hb_000201_120 0.0816040324 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
16 Hb_000680_140 0.0825464119 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
17 Hb_008173_090 0.08425494 - - glutathione peroxidase, putative [Ricinus communis]
18 Hb_003226_100 0.0850927149 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
19 Hb_001235_190 0.0853793454 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_029584_060 0.0857731705 - - Grave disease carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000334_210 Hb_000334_210 Hb_000111_340 Hb_000111_340 Hb_000334_210--Hb_000111_340 Hb_003656_070 Hb_003656_070 Hb_000334_210--Hb_003656_070 Hb_001047_230 Hb_001047_230 Hb_000334_210--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_001616_040 Hb_001616_040 Hb_000334_210--Hb_001616_040 Hb_009711_020 Hb_009711_020 Hb_000334_210--Hb_009711_020 Hb_007944_040 Hb_007944_040 Hb_000111_340--Hb_007944_040 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_002588_010 Hb_002588_010 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_000111_340--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_000608_370 Hb_000608_370 Hb_001047_230--Hb_000608_370 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_129204_030 Hb_129204_030 Hb_001047_230--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_001047_230--Hb_007416_030 Hb_002768_030 Hb_002768_030 Hb_003683_110--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_003683_110--Hb_001780_040 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_003683_110--Hb_007416_030 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_001616_040--Hb_003226_100 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_009711_020--Hb_001616_040 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3635 8.52718 8.1338 7.69498 11.4407 10.3614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3494 37.067 15.4592 7.32706 7.60471

CAGE analysis