Hb_000334_220

Information

Type -
Description -
Location Contig334: 195763-199395
Sequence    

Annotation

kegg
ID rcu:RCOM_0968100
description hypothetical protein
nr
ID KDP43485.1
description hypothetical protein JCGZ_16772 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16772 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35047: 195796-199472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_220 0.0 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
2 Hb_005016_160 0.0655617213 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
3 Hb_005541_010 0.0712212538 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
4 Hb_003052_140 0.0742653006 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
5 Hb_012564_030 0.0774552387 - - coronatine-insensitive 1 [Hevea brasiliensis]
6 Hb_000336_250 0.0788891475 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
7 Hb_000479_220 0.0789644201 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
8 Hb_004109_030 0.0802572852 - - conserved hypothetical protein [Ricinus communis]
9 Hb_030827_020 0.0826523463 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
10 Hb_002043_140 0.0859560834 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_000832_030 0.0880265767 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
12 Hb_001213_050 0.0894793208 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
13 Hb_048219_010 0.090955387 - - coronatine-insensitive 1 [Hevea brasiliensis]
14 Hb_003082_010 0.0920864043 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
15 Hb_000603_280 0.0931781032 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
16 Hb_008511_090 0.0936341504 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
17 Hb_002843_120 0.0957049987 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
18 Hb_000856_190 0.0959951716 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_003373_040 0.096731665 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
20 Hb_015807_070 0.0968668109 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]

Gene co-expression network

sample Hb_000334_220 Hb_000334_220 Hb_005016_160 Hb_005016_160 Hb_000334_220--Hb_005016_160 Hb_005541_010 Hb_005541_010 Hb_000334_220--Hb_005541_010 Hb_003052_140 Hb_003052_140 Hb_000334_220--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_000334_220--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_000334_220--Hb_000336_250 Hb_000479_220 Hb_000479_220 Hb_000334_220--Hb_000479_220 Hb_005016_160--Hb_005541_010 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_005016_160--Hb_003052_140 Hb_005016_160--Hb_012564_030 Hb_005016_160--Hb_000336_250 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005541_010--Hb_003052_140 Hb_005541_010--Hb_012564_030 Hb_002411_030 Hb_002411_030 Hb_005541_010--Hb_002411_030 Hb_003052_140--Hb_000336_250 Hb_000125_170 Hb_000125_170 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_048219_010 Hb_048219_010 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_012564_030--Hb_003544_110 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012564_030--Hb_012055_060 Hb_003609_030 Hb_003609_030 Hb_000336_250--Hb_003609_030 Hb_031527_020 Hb_031527_020 Hb_000336_250--Hb_031527_020 Hb_001946_040 Hb_001946_040 Hb_000336_250--Hb_001946_040 Hb_000336_250--Hb_000479_220 Hb_000336_250--Hb_007416_180 Hb_008253_030 Hb_008253_030 Hb_000479_220--Hb_008253_030 Hb_000070_080 Hb_000070_080 Hb_000479_220--Hb_000070_080 Hb_138596_010 Hb_138596_010 Hb_000479_220--Hb_138596_010 Hb_002615_090 Hb_002615_090 Hb_000479_220--Hb_002615_090 Hb_002253_080 Hb_002253_080 Hb_000479_220--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_000479_220--Hb_002843_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.45683 8.61954 3.5235 4.22322 4.90217 5.0014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93463 4.04951 6.67095 2.74155 3.02502

CAGE analysis