Hb_000335_010

Information

Type -
Description -
Location Contig335: 29382-36148
Sequence    

Annotation

kegg
ID rcu:RCOM_0976080
description WD-repeat protein, putative
nr
ID XP_002521240.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8N7N5
description DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1
trembl
ID B9S5H1
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0976080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35093: 29438-36058 , PASA_asmbl_35094: 29438-36058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000335_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_031754_010 0.0503988055 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
3 Hb_000457_060 0.0642171313 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
4 Hb_000789_080 0.0644148451 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
5 Hb_001437_100 0.0657749797 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
6 Hb_002043_170 0.0659388157 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
7 Hb_002883_010 0.0675550435 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
8 Hb_021409_170 0.0676508541 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
9 Hb_000035_040 0.0695301937 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
10 Hb_001863_110 0.0707981979 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000631_150 0.070799208 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
12 Hb_002400_180 0.0729957055 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003581_120 0.0744931526 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
14 Hb_000317_440 0.0746208372 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
15 Hb_000300_580 0.0766645044 - - PREDICTED: importin-5-like [Jatropha curcas]
16 Hb_046615_020 0.0780128445 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
17 Hb_000640_320 0.078402397 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
18 Hb_000531_090 0.0790695827 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
19 Hb_001221_040 0.0803240318 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
20 Hb_002893_150 0.0814533819 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]

Gene co-expression network

sample Hb_000335_010 Hb_000335_010 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010 Hb_001975_020 Hb_001975_020 Hb_031754_010--Hb_001975_020 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_031754_010--Hb_002883_010 Hb_046615_020 Hb_046615_020 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_004881_050 Hb_004881_050 Hb_000457_060--Hb_004881_050 Hb_000370_030 Hb_000370_030 Hb_000457_060--Hb_000370_030 Hb_004608_020 Hb_004608_020 Hb_000457_060--Hb_004608_020 Hb_000457_060--Hb_000789_080 Hb_000631_150 Hb_000631_150 Hb_000457_060--Hb_000631_150 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_026099_010 Hb_026099_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_002044_060 Hb_002044_060 Hb_000789_080--Hb_002044_060 Hb_001437_100--Hb_002043_170 Hb_001437_100--Hb_002883_010 Hb_000317_440 Hb_000317_440 Hb_001437_100--Hb_000317_440 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_002043_170--Hb_046615_020 Hb_002043_170--Hb_002883_010 Hb_002043_170--Hb_000035_040 Hb_002883_010--Hb_000317_440 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.3858 28.7454 13.445 22.2257 77.8579 86.5793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.4947 17.8675 25.6822 32.633 25.1338

CAGE analysis