Hb_000335_020

Information

Type -
Description -
Location Contig335: 45478-48113
Sequence    

Annotation

kegg
ID rcu:RCOM_0976090
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521241.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O04590
description Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1
trembl
ID B9S5H2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0976090 PE=4 SV=1
Gene Ontology
ID GO:0016554
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35099: 46853-47003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000335_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000514_060 0.0985685271 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
3 Hb_046198_010 0.1021779244 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
4 Hb_001956_200 0.1039044244 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
5 Hb_000140_230 0.1057460853 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
6 Hb_008500_010 0.1086106254 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
7 Hb_001584_150 0.1096079597 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
8 Hb_000463_140 0.1099020769 - - Poly(rC)-binding protein, putative [Ricinus communis]
9 Hb_001085_060 0.1102912558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
10 Hb_009851_070 0.1110792908 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
11 Hb_001507_020 0.1123650611 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
12 Hb_000832_020 0.1125429238 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
13 Hb_004137_060 0.1133642813 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
14 Hb_000796_030 0.1143048664 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
15 Hb_000011_330 0.1161856499 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
16 Hb_000009_600 0.1164981839 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
17 Hb_014267_010 0.1174625215 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
18 Hb_007757_110 0.118291351 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_006316_040 0.118924488 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
20 Hb_002311_040 0.1190180123 - - hypothetical protein JCGZ_18966 [Jatropha curcas]

Gene co-expression network

sample Hb_000335_020 Hb_000335_020 Hb_000514_060 Hb_000514_060 Hb_000335_020--Hb_000514_060 Hb_046198_010 Hb_046198_010 Hb_000335_020--Hb_046198_010 Hb_001956_200 Hb_001956_200 Hb_000335_020--Hb_001956_200 Hb_000140_230 Hb_000140_230 Hb_000335_020--Hb_000140_230 Hb_008500_010 Hb_008500_010 Hb_000335_020--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_000335_020--Hb_001584_150 Hb_009411_010 Hb_009411_010 Hb_000514_060--Hb_009411_010 Hb_007757_110 Hb_007757_110 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_002232_030 Hb_002232_030 Hb_000514_060--Hb_002232_030 Hb_001930_010 Hb_001930_010 Hb_000514_060--Hb_001930_010 Hb_000011_330 Hb_000011_330 Hb_046198_010--Hb_000011_330 Hb_001266_060 Hb_001266_060 Hb_046198_010--Hb_001266_060 Hb_000567_380 Hb_000567_380 Hb_046198_010--Hb_000567_380 Hb_000330_100 Hb_000330_100 Hb_046198_010--Hb_000330_100 Hb_000063_140 Hb_000063_140 Hb_046198_010--Hb_000063_140 Hb_004452_010 Hb_004452_010 Hb_001956_200--Hb_004452_010 Hb_001956_200--Hb_001266_060 Hb_001956_200--Hb_008500_010 Hb_001956_200--Hb_001584_150 Hb_000049_310 Hb_000049_310 Hb_001956_200--Hb_000049_310 Hb_031042_020 Hb_031042_020 Hb_001956_200--Hb_031042_020 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_001584_150--Hb_002311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36049 1.71469 0.865997 0.907815 2.67863 2.22719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.665448 1.49317 3.33886 1.23536 1.26734

CAGE analysis