Hb_000335_030

Information

Type -
Description -
Location Contig335: 62700-64274
Sequence    

Annotation

kegg
ID rcu:RCOM_0975970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077696.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
swissprot
ID Q8GWA9
description Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1
trembl
ID B9S5H0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0975970 PE=4 SV=1
Gene Ontology
ID GO:0009073
description pentatricopeptide repeat-containing protein at2g17033

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35101: 63084-64307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000335_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
2 Hb_004191_020 0.0779777267 - - PREDICTED: cysteine synthase [Jatropha curcas]
3 Hb_001341_070 0.0780541117 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
4 Hb_029510_050 0.0919686369 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
5 Hb_010883_040 0.0927098459 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
6 Hb_006478_020 0.094838127 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000676_250 0.0973223761 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
8 Hb_002496_010 0.0978123586 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
9 Hb_002685_210 0.0998093982 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
10 Hb_062135_030 0.0998608633 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
11 Hb_002600_090 0.0998719405 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001971_010 0.1010268268 - - F23N19.4 [Arabidopsis thaliana]
13 Hb_015941_020 0.1010984517 - - -
14 Hb_021409_180 0.1024194136 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
15 Hb_010931_130 0.1040169194 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
16 Hb_001366_180 0.1042492167 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
17 Hb_024128_020 0.1051964719 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
18 Hb_000172_290 0.1055569817 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
19 Hb_001512_010 0.1073672933 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
20 Hb_006274_030 0.1079492229 - - F-box and wd40 domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000335_030 Hb_000335_030 Hb_004191_020 Hb_004191_020 Hb_000335_030--Hb_004191_020 Hb_001341_070 Hb_001341_070 Hb_000335_030--Hb_001341_070 Hb_029510_050 Hb_029510_050 Hb_000335_030--Hb_029510_050 Hb_010883_040 Hb_010883_040 Hb_000335_030--Hb_010883_040 Hb_006478_020 Hb_006478_020 Hb_000335_030--Hb_006478_020 Hb_000676_250 Hb_000676_250 Hb_000335_030--Hb_000676_250 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_000556_090 Hb_000556_090 Hb_001341_070--Hb_000556_090 Hb_000883_060 Hb_000883_060 Hb_001341_070--Hb_000883_060 Hb_001341_070--Hb_029510_050 Hb_002685_210 Hb_002685_210 Hb_001341_070--Hb_002685_210 Hb_003153_010 Hb_003153_010 Hb_001341_070--Hb_003153_010 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_029510_050--Hb_002685_210 Hb_001314_080 Hb_001314_080 Hb_010883_040--Hb_001314_080 Hb_015941_020 Hb_015941_020 Hb_010883_040--Hb_015941_020 Hb_010883_040--Hb_002496_020 Hb_001369_750 Hb_001369_750 Hb_010883_040--Hb_001369_750 Hb_002276_020 Hb_002276_020 Hb_010883_040--Hb_002276_020 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_003177_030 Hb_003177_030 Hb_000676_250--Hb_003177_030 Hb_023344_120 Hb_023344_120 Hb_000676_250--Hb_023344_120 Hb_027380_130 Hb_027380_130 Hb_000676_250--Hb_027380_130 Hb_000019_030 Hb_000019_030 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_005144_160 Hb_005144_160 Hb_000676_250--Hb_005144_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.35529 4.07227 6.58455 9.0973 7.15705 7.51185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0869 7.18681 12.8857 6.34841 12.9717

CAGE analysis