Hb_000336_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig336: 9855-11027
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04510g
description zinc finger family protein
nr
ID XP_006372730.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q9ZWA1
description Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1
trembl
ID U5FMC6
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0017s04510g PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_010 0.0 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
2 Hb_000175_080 0.0385341156 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
3 Hb_004724_280 0.0477581573 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001123_330 0.0620239401 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
5 Hb_003420_010 0.0648537034 - - zinc finger protein, putative [Ricinus communis]
6 Hb_003185_040 0.0860742142 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
7 Hb_105377_010 0.0896616201 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
8 Hb_123713_010 0.0910511502 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_164853_010 0.0912593922 - - Patatin precursor, putative [Ricinus communis]
10 Hb_002078_070 0.0925626838 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000059_190 0.0937321199 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
12 Hb_003680_180 0.1032449544 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_007474_010 0.1088837647 - - vacuolar invertase [Manihot esculenta]
14 Hb_000101_110 0.1125944015 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_001882_120 0.1126579593 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
16 Hb_043777_010 0.1126620311 - - conserved hypothetical protein [Ricinus communis]
17 Hb_021281_010 0.1127012715 - - Major latex protein, putative [Ricinus communis]
18 Hb_003891_020 0.1129753491 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
19 Hb_005743_040 0.1130089508 - - JHL22C18.10 [Jatropha curcas]
20 Hb_001279_060 0.1130196924 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]

Gene co-expression network

sample Hb_000336_010 Hb_000336_010 Hb_000175_080 Hb_000175_080 Hb_000336_010--Hb_000175_080 Hb_004724_280 Hb_004724_280 Hb_000336_010--Hb_004724_280 Hb_001123_330 Hb_001123_330 Hb_000336_010--Hb_001123_330 Hb_003420_010 Hb_003420_010 Hb_000336_010--Hb_003420_010 Hb_003185_040 Hb_003185_040 Hb_000336_010--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_000336_010--Hb_105377_010 Hb_000175_080--Hb_004724_280 Hb_000175_080--Hb_001123_330 Hb_000175_080--Hb_003420_010 Hb_003680_180 Hb_003680_180 Hb_000175_080--Hb_003680_180 Hb_000059_190 Hb_000059_190 Hb_000175_080--Hb_000059_190 Hb_004724_280--Hb_001123_330 Hb_004724_280--Hb_003420_010 Hb_007474_010 Hb_007474_010 Hb_004724_280--Hb_007474_010 Hb_002078_070 Hb_002078_070 Hb_004724_280--Hb_002078_070 Hb_001123_330--Hb_003680_180 Hb_001123_330--Hb_003185_040 Hb_001123_330--Hb_007474_010 Hb_164853_010 Hb_164853_010 Hb_003420_010--Hb_164853_010 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_004880_040 Hb_004880_040 Hb_003185_040--Hb_004880_040 Hb_003185_040--Hb_000059_190 Hb_003085_070 Hb_003085_070 Hb_003185_040--Hb_003085_070 Hb_003185_040--Hb_105377_010 Hb_003598_020 Hb_003598_020 Hb_105377_010--Hb_003598_020 Hb_105377_010--Hb_004880_040 Hb_105377_010--Hb_004724_280 Hb_005731_040 Hb_005731_040 Hb_105377_010--Hb_005731_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0182401 8.59694 10.5272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.474494

CAGE analysis