Hb_000336_020

Information

Type -
Description -
Location Contig336: 27709-44339
Sequence    

Annotation

kegg
ID pmum:103328398
description phospholipid-transporting ATPase 2
nr
ID XP_012088237.1
description PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
swissprot
ID P98205
description Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1
trembl
ID A0A067JJF0
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_25753 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35150: 27747-37701 , PASA_asmbl_35151: 27840-37701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_020 0.0 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
2 Hb_000996_020 0.0658272055 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
3 Hb_008397_010 0.0660649789 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
4 Hb_000529_060 0.0670086392 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
5 Hb_001856_180 0.0677926436 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
6 Hb_012055_110 0.0681295876 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
7 Hb_002849_170 0.0687234621 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
8 Hb_000702_090 0.0688338993 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
9 Hb_000661_120 0.0690443742 - - cap binding protein, putative [Ricinus communis]
10 Hb_000954_010 0.0697545315 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
11 Hb_002014_040 0.0698459053 - - site-1 protease, putative [Ricinus communis]
12 Hb_007248_030 0.0703367564 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
13 Hb_011972_020 0.0709755066 - - protein binding protein, putative [Ricinus communis]
14 Hb_007597_010 0.0723033508 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
15 Hb_000111_170 0.0757225285 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
16 Hb_009252_050 0.0758341886 - - protein binding protein, putative [Ricinus communis]
17 Hb_002461_020 0.0763564383 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
18 Hb_000270_190 0.076480939 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
19 Hb_000046_600 0.0785336455 - - PREDICTED: cullin-1-like [Jatropha curcas]
20 Hb_000358_100 0.0787691753 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]

Gene co-expression network

sample Hb_000336_020 Hb_000336_020 Hb_000996_020 Hb_000996_020 Hb_000336_020--Hb_000996_020 Hb_008397_010 Hb_008397_010 Hb_000336_020--Hb_008397_010 Hb_000529_060 Hb_000529_060 Hb_000336_020--Hb_000529_060 Hb_001856_180 Hb_001856_180 Hb_000336_020--Hb_001856_180 Hb_012055_110 Hb_012055_110 Hb_000336_020--Hb_012055_110 Hb_002849_170 Hb_002849_170 Hb_000336_020--Hb_002849_170 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_000640_070 Hb_000640_070 Hb_008397_010--Hb_000640_070 Hb_001194_020 Hb_001194_020 Hb_008397_010--Hb_001194_020 Hb_000284_230 Hb_000284_230 Hb_008397_010--Hb_000284_230 Hb_073973_150 Hb_073973_150 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_000345_160 Hb_000345_160 Hb_001856_180--Hb_000345_160 Hb_007248_030 Hb_007248_030 Hb_001856_180--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_001856_180--Hb_007062_040 Hb_001405_210 Hb_001405_210 Hb_001856_180--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_001856_180--Hb_000702_090 Hb_001377_310 Hb_001377_310 Hb_001856_180--Hb_001377_310 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_001673_050 Hb_001673_050 Hb_002849_170--Hb_001673_050 Hb_000340_030 Hb_000340_030 Hb_002849_170--Hb_000340_030 Hb_031641_010 Hb_031641_010 Hb_002849_170--Hb_031641_010 Hb_001723_010 Hb_001723_010 Hb_002849_170--Hb_001723_010 Hb_002849_170--Hb_000529_060 Hb_004976_010 Hb_004976_010 Hb_002849_170--Hb_004976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4723 7.70177 7.83994 7.84884 5.74686 5.45811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72193 3.93424 2.67767 6.04522 7.65357

CAGE analysis