Hb_000336_120

Information

Type -
Description -
Location Contig336: 201891-202564
Sequence    

Annotation

kegg
ID rcu:RCOM_1677760
description Blue copper protein precursor, putative
nr
ID XP_011003937.1
description PREDICTED: mavicyanin [Populus euphratica]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID B9RBK2
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1677760 PE=4 SV=1
Gene Ontology
ID GO:0031225
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35157: 201773-202567 , PASA_asmbl_35158: 203167-206386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_120 0.0 - - PREDICTED: mavicyanin [Populus euphratica]
2 Hb_012114_090 0.0485661912 - - tubulin beta chain, putative [Ricinus communis]
3 Hb_015175_070 0.058649963 - - cysteine protease, putative [Ricinus communis]
4 Hb_000310_050 0.0596091808 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000699_220 0.0634124891 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
6 Hb_001369_480 0.0706788269 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
7 Hb_006717_060 0.0717306351 - - PREDICTED: peroxidase 42 [Jatropha curcas]
8 Hb_001349_040 0.0722103837 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
9 Hb_001104_060 0.0838919718 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
10 Hb_000531_030 0.0887385907 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006573_120 0.0915224006 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
12 Hb_002092_060 0.091731259 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001269_180 0.0935874814 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_071079_040 0.093825111 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
15 Hb_000083_200 0.0962194757 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006153_140 0.0973483684 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
17 Hb_005295_030 0.0982302731 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
18 Hb_005440_040 0.0982320705 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
19 Hb_000497_030 0.1004559092 - - -
20 Hb_001456_030 0.1023881319 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]

Gene co-expression network

sample Hb_000336_120 Hb_000336_120 Hb_012114_090 Hb_012114_090 Hb_000336_120--Hb_012114_090 Hb_015175_070 Hb_015175_070 Hb_000336_120--Hb_015175_070 Hb_000310_050 Hb_000310_050 Hb_000336_120--Hb_000310_050 Hb_000699_220 Hb_000699_220 Hb_000336_120--Hb_000699_220 Hb_001369_480 Hb_001369_480 Hb_000336_120--Hb_001369_480 Hb_006717_060 Hb_006717_060 Hb_000336_120--Hb_006717_060 Hb_012114_090--Hb_000699_220 Hb_012114_090--Hb_001369_480 Hb_012114_090--Hb_006717_060 Hb_012114_090--Hb_000310_050 Hb_001456_030 Hb_001456_030 Hb_012114_090--Hb_001456_030 Hb_002092_060 Hb_002092_060 Hb_015175_070--Hb_002092_060 Hb_015175_070--Hb_000310_050 Hb_002309_020 Hb_002309_020 Hb_015175_070--Hb_002309_020 Hb_005295_030 Hb_005295_030 Hb_015175_070--Hb_005295_030 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_006573_120 Hb_006573_120 Hb_000310_050--Hb_006573_120 Hb_000310_050--Hb_001349_040 Hb_000310_050--Hb_000699_220 Hb_000699_220--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_000699_220--Hb_000497_030 Hb_000699_220--Hb_001349_040 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020 Hb_001269_180 Hb_001269_180 Hb_001369_480--Hb_001269_180 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_001369_480--Hb_006717_060 Hb_001369_480--Hb_000699_220 Hb_006717_060--Hb_000497_030 Hb_003580_020 Hb_003580_020 Hb_006717_060--Hb_003580_020 Hb_006717_060--Hb_001349_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33309 9.01648 39.4568 251.755 0.673349 0.182169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0344054 71.5047

CAGE analysis