Hb_000336_160

Information

Type -
Description -
Location Contig336: 226065-228092
Sequence    

Annotation

kegg
ID rcu:RCOM_1677900
description ATP binding protein, putative (EC:2.7.10.1)
nr
ID XP_002509540.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SGI7
description Protein LYK2 OS=Arabidopsis thaliana GN=LYK2 PE=2 SV=1
trembl
ID B9RBK6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1677900 PE=4 SV=1
Gene Ontology
ID GO:0004714
description protein lyk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35164: 226914-227287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_160 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_174829_040 0.1119142273 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
3 Hb_007371_010 0.1132084806 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
4 Hb_001190_020 0.1143785257 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_001437_200 0.1222456452 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
6 Hb_004161_010 0.1255803442 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
7 Hb_000627_140 0.1256112444 - - ATP binding protein, putative [Ricinus communis]
8 Hb_027913_010 0.1341010943 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_010368_040 0.1350452711 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006519_010 0.1376025937 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
11 Hb_011671_290 0.1377577939 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
12 Hb_116349_050 0.1410838563 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
13 Hb_000414_100 0.1418307809 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
14 Hb_000610_030 0.1456573574 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
15 Hb_011805_060 0.1464857124 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
16 Hb_004656_030 0.1470424723 - - putative pectin methylesterase family protein [Populus trichocarpa]
17 Hb_002042_190 0.147963165 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
18 Hb_001510_050 0.1485219157 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000142_010 0.1500130703 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
20 Hb_000959_290 0.150620287 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]

Gene co-expression network

sample Hb_000336_160 Hb_000336_160 Hb_174829_040 Hb_174829_040 Hb_000336_160--Hb_174829_040 Hb_007371_010 Hb_007371_010 Hb_000336_160--Hb_007371_010 Hb_001190_020 Hb_001190_020 Hb_000336_160--Hb_001190_020 Hb_001437_200 Hb_001437_200 Hb_000336_160--Hb_001437_200 Hb_004161_010 Hb_004161_010 Hb_000336_160--Hb_004161_010 Hb_000627_140 Hb_000627_140 Hb_000336_160--Hb_000627_140 Hb_000142_010 Hb_000142_010 Hb_174829_040--Hb_000142_010 Hb_002042_190 Hb_002042_190 Hb_174829_040--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_174829_040--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_174829_040--Hb_002311_490 Hb_000172_300 Hb_000172_300 Hb_174829_040--Hb_000172_300 Hb_000414_100 Hb_000414_100 Hb_174829_040--Hb_000414_100 Hb_001510_050 Hb_001510_050 Hb_007371_010--Hb_001510_050 Hb_010368_040 Hb_010368_040 Hb_007371_010--Hb_010368_040 Hb_133646_010 Hb_133646_010 Hb_007371_010--Hb_133646_010 Hb_001693_030 Hb_001693_030 Hb_007371_010--Hb_001693_030 Hb_004098_010 Hb_004098_010 Hb_007371_010--Hb_004098_010 Hb_006519_010 Hb_006519_010 Hb_001190_020--Hb_006519_010 Hb_000959_290 Hb_000959_290 Hb_001190_020--Hb_000959_290 Hb_001190_020--Hb_010368_040 Hb_027913_010 Hb_027913_010 Hb_001190_020--Hb_027913_010 Hb_004059_010 Hb_004059_010 Hb_001190_020--Hb_004059_010 Hb_004994_070 Hb_004994_070 Hb_001190_020--Hb_004994_070 Hb_001437_200--Hb_004161_010 Hb_001437_200--Hb_027913_010 Hb_004656_030 Hb_004656_030 Hb_001437_200--Hb_004656_030 Hb_003847_140 Hb_003847_140 Hb_001437_200--Hb_003847_140 Hb_005081_060 Hb_005081_060 Hb_001437_200--Hb_005081_060 Hb_000039_100 Hb_000039_100 Hb_001437_200--Hb_000039_100 Hb_002701_140 Hb_002701_140 Hb_004161_010--Hb_002701_140 Hb_004161_010--Hb_004656_030 Hb_004161_010--Hb_027913_010 Hb_000656_360 Hb_000656_360 Hb_004161_010--Hb_000656_360 Hb_004161_010--Hb_003847_140 Hb_000627_140--Hb_133646_010 Hb_000627_140--Hb_004161_010 Hb_176149_010 Hb_176149_010 Hb_000627_140--Hb_176149_010 Hb_000627_140--Hb_000656_360 Hb_004586_380 Hb_004586_380 Hb_000627_140--Hb_004586_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0684553 20.8167 0.187267 2.45275 0.244407 0.0461197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0699439 0.0995137 0.716445 0.0739384

CAGE analysis