Hb_000336_170

Information

Type -
Description -
Location Contig336: 233979-234407
Sequence    

Annotation

kegg
ID rcu:RCOM_1677910
description Polcalcin Jun o, putative
nr
ID XP_002509541.1
description Polcalcin Jun o, putative [Ricinus communis]
swissprot
ID Q9SRE6
description Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1
trembl
ID B9RBK7
description Polcalcin Jun o, putative OS=Ricinus communis GN=RCOM_1677910 PE=4 SV=1
Gene Ontology
ID GO:0005622
description calcium-binding protein cml19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35165: 233953-234462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_170 0.0 - - Polcalcin Jun o, putative [Ricinus communis]
2 Hb_000261_540 0.0604897749 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
3 Hb_163950_060 0.0624202422 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_007943_040 0.0714720012 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
5 Hb_008978_010 0.0764342293 - - transmembrane receptor, putative [Ricinus communis]
6 Hb_011980_020 0.0784011057 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_009897_030 0.08738984 - - -
8 Hb_004767_040 0.0899246323 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
9 Hb_000333_150 0.0931773772 - - hypothetical protein RCOM_0711500 [Ricinus communis]
10 Hb_027556_080 0.0935031774 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
11 Hb_013057_010 0.0946383192 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
12 Hb_093204_010 0.1018735031 - - conserved hypothetical protein [Ricinus communis]
13 Hb_186671_020 0.1041448419 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_005687_020 0.104336865 - - P66 protein [Hevea brasiliensis]
15 Hb_000959_290 0.1044129292 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
16 Hb_004994_070 0.1060541166 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
17 Hb_001985_010 0.1063275975 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004096_040 0.1080410981 - - cytochrome P450, putative [Ricinus communis]
19 Hb_006519_010 0.1082024254 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
20 Hb_120917_010 0.110182118 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000336_170 Hb_000336_170 Hb_000261_540 Hb_000261_540 Hb_000336_170--Hb_000261_540 Hb_163950_060 Hb_163950_060 Hb_000336_170--Hb_163950_060 Hb_007943_040 Hb_007943_040 Hb_000336_170--Hb_007943_040 Hb_008978_010 Hb_008978_010 Hb_000336_170--Hb_008978_010 Hb_011980_020 Hb_011980_020 Hb_000336_170--Hb_011980_020 Hb_009897_030 Hb_009897_030 Hb_000336_170--Hb_009897_030 Hb_000261_540--Hb_007943_040 Hb_000261_540--Hb_009897_030 Hb_000261_540--Hb_008978_010 Hb_000261_540--Hb_163950_060 Hb_004767_040 Hb_004767_040 Hb_000261_540--Hb_004767_040 Hb_163950_060--Hb_011980_020 Hb_163950_060--Hb_007943_040 Hb_163950_060--Hb_008978_010 Hb_186671_020 Hb_186671_020 Hb_163950_060--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_007943_040--Hb_009897_030 Hb_007943_040--Hb_011980_020 Hb_013057_010 Hb_013057_010 Hb_007943_040--Hb_013057_010 Hb_000333_150 Hb_000333_150 Hb_008978_010--Hb_000333_150 Hb_008978_010--Hb_186671_020 Hb_008978_010--Hb_011980_020 Hb_011980_020--Hb_005687_020 Hb_001796_010 Hb_001796_010 Hb_011980_020--Hb_001796_010 Hb_039757_010 Hb_039757_010 Hb_009897_030--Hb_039757_010 Hb_001405_180 Hb_001405_180 Hb_009897_030--Hb_001405_180 Hb_009897_030--Hb_004767_040 Hb_000426_060 Hb_000426_060 Hb_009897_030--Hb_000426_060 Hb_009897_030--Hb_011980_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148108 224.758 1.37465 8.50367 0.0748645 0.0670973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.13733 0 0.0581407 0.493582

CAGE analysis