Hb_000336_190

Information

Type -
Description -
Location Contig336: 254836-256161
Sequence    

Annotation

kegg
ID brp:103846183
description UPF0481 protein At3g47200
nr
ID XP_012477861.1
description PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2MRT1
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G008500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35166: 254531-257357 , PASA_asmbl_35167: 256472-256715
cDNA
(Sanger)
(ID:Location)		 029_J09.ab1: 255953-257357 , 037_J06.ab1: 255830-257357

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_190 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
2 Hb_178658_010 0.120373801 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
3 Hb_000836_210 0.1278271975 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
4 Hb_000003_760 0.1349491394 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
5 Hb_002875_070 0.1373147057 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
6 Hb_002849_110 0.1393625353 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
7 Hb_001472_140 0.1395502349 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
8 Hb_001956_190 0.1408729329 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_000506_130 0.1445120305 - - DGCR14-related family protein [Populus trichocarpa]
10 Hb_000103_420 0.1447067872 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
11 Hb_012787_040 0.1465323025 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
12 Hb_020967_010 0.1475676118 - - -
13 Hb_001863_270 0.1498004603 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
14 Hb_000087_100 0.15195049 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
15 Hb_103788_010 0.1553612469 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_098160_010 0.1563176897 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
17 Hb_000805_040 0.1565401765 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
18 Hb_002053_030 0.1606073053 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_003637_020 0.1612765018 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000373_250 0.1635896069 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]

Gene co-expression network

sample Hb_000336_190 Hb_000336_190 Hb_178658_010 Hb_178658_010 Hb_000336_190--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_000336_190--Hb_000836_210 Hb_000003_760 Hb_000003_760 Hb_000336_190--Hb_000003_760 Hb_002875_070 Hb_002875_070 Hb_000336_190--Hb_002875_070 Hb_002849_110 Hb_002849_110 Hb_000336_190--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000336_190--Hb_001472_140 Hb_002311_110 Hb_002311_110 Hb_178658_010--Hb_002311_110 Hb_178658_010--Hb_000836_210 Hb_178658_010--Hb_002849_110 Hb_007382_100 Hb_007382_100 Hb_178658_010--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_178658_010--Hb_000087_100 Hb_000836_210--Hb_002849_110 Hb_000836_210--Hb_001472_140 Hb_000836_210--Hb_000087_100 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_000836_210--Hb_002311_110 Hb_001787_070 Hb_001787_070 Hb_000003_760--Hb_001787_070 Hb_111881_030 Hb_111881_030 Hb_000003_760--Hb_111881_030 Hb_009557_050 Hb_009557_050 Hb_000003_760--Hb_009557_050 Hb_001956_190 Hb_001956_190 Hb_000003_760--Hb_001956_190 Hb_000003_760--Hb_178658_010 Hb_005714_100 Hb_005714_100 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_004297_080 Hb_004297_080 Hb_001472_140--Hb_004297_080 Hb_008406_030 Hb_008406_030 Hb_001472_140--Hb_008406_030 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.98799 46.0036 10.3807 29.0983 3.03298 2.64747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.05441 2.35333 2.91491 3.25412 4.65993

CAGE analysis