Hb_000336_200

Information

Type -
Description -
Location Contig336: 257653-264249
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34060g
description POPTRDRAFT_549673; hypothetical protein
nr
ID XP_012070652.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID P22686
description Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1
trembl
ID A0A067LN97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10145 PE=4 SV=1
Gene Ontology
ID GO:0009507
description upf0481 protein at3g47200-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35169: 257974-258112 , PASA_asmbl_35174: 258640-259394 , PASA_asmbl_35175: 258757-259100 , PASA_asmbl_35176: 259813-260053 , PASA_asmbl_35177: 260079-264228
cDNA
(Sanger)
(ID:Location)		 016_P18.ab1: 261326-264228 , 027_G06.ab1: 261354-264228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_200 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_000665_270 0.0782761566 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
3 Hb_001269_500 0.07856038 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
4 Hb_001649_030 0.0930828129 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
5 Hb_000465_440 0.0967971071 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
6 Hb_000358_040 0.1114564232 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
7 Hb_009288_040 0.1129702392 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
8 Hb_073973_120 0.113841065 - - zinc finger protein, putative [Ricinus communis]
9 Hb_012799_190 0.1140128183 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
10 Hb_002005_040 0.117141278 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_003752_090 0.1191390303 - - chitinase, putative [Ricinus communis]
12 Hb_002928_030 0.1242318586 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
13 Hb_000260_710 0.1242692813 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
14 Hb_000762_110 0.1244179493 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
15 Hb_003994_080 0.1257989579 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
16 Hb_006198_130 0.1267066772 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
17 Hb_000107_250 0.1279099423 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
18 Hb_000537_070 0.1293640998 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
19 Hb_010620_050 0.1301846332 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
20 Hb_005063_080 0.1302893225 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000336_200 Hb_000336_200 Hb_000665_270 Hb_000665_270 Hb_000336_200--Hb_000665_270 Hb_001269_500 Hb_001269_500 Hb_000336_200--Hb_001269_500 Hb_001649_030 Hb_001649_030 Hb_000336_200--Hb_001649_030 Hb_000465_440 Hb_000465_440 Hb_000336_200--Hb_000465_440 Hb_000358_040 Hb_000358_040 Hb_000336_200--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000336_200--Hb_009288_040 Hb_000665_270--Hb_000465_440 Hb_000665_270--Hb_001649_030 Hb_000665_270--Hb_001269_500 Hb_000665_270--Hb_000358_040 Hb_000665_270--Hb_009288_040 Hb_001269_500--Hb_001649_030 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_000465_440--Hb_009288_040 Hb_000465_440--Hb_003752_090 Hb_001793_020 Hb_001793_020 Hb_000465_440--Hb_001793_020 Hb_000465_440--Hb_001649_030 Hb_000358_040--Hb_002928_030 Hb_004629_030 Hb_004629_030 Hb_000358_040--Hb_004629_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_000358_040--Hb_003376_390 Hb_009288_040--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82997 3.5879 8.56205 7.70167 1.71271 3.31531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43742 1.93227 1.00902 1.29048 14.0777

CAGE analysis