Hb_000336_240

Information

Type transcription factor
Description TF Family: mTERF
Location Contig336: 296656-297645
Sequence    

Annotation

kegg
ID zma:100285792
description si618037g07; LOC100285792
nr
ID NP_001152154.1
description LOC100285792 [Zea mays]
swissprot
ID -
description -
trembl
ID B6U9Q8
description mTERF family protein OS=Zea mays PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_240 0.0 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
2 Hb_010883_050 0.075125105 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
3 Hb_007009_010 0.0752751976 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
4 Hb_004889_010 0.0753664791 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
5 Hb_000363_360 0.0755420798 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
6 Hb_002007_210 0.0824421501 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
7 Hb_000638_170 0.082755834 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
8 Hb_076233_040 0.082863012 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
9 Hb_009615_070 0.0847765961 - - type X protein phosphatase-II [Populus trichocarpa]
10 Hb_148121_040 0.0868582607 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
11 Hb_004696_080 0.0869482713 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
12 Hb_000985_060 0.0884390486 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
13 Hb_002110_200 0.0892203358 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002303_060 0.0901581144 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000436_130 0.0908314714 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
16 Hb_001776_160 0.0909779201 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
17 Hb_003540_030 0.0934010447 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
18 Hb_003697_040 0.0939903102 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
19 Hb_005551_040 0.0942633867 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
20 Hb_005054_210 0.0942981517 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]

Gene co-expression network

sample Hb_000336_240 Hb_000336_240 Hb_010883_050 Hb_010883_050 Hb_000336_240--Hb_010883_050 Hb_007009_010 Hb_007009_010 Hb_000336_240--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_000336_240--Hb_004889_010 Hb_000363_360 Hb_000363_360 Hb_000336_240--Hb_000363_360 Hb_002007_210 Hb_002007_210 Hb_000336_240--Hb_002007_210 Hb_000638_170 Hb_000638_170 Hb_000336_240--Hb_000638_170 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_010883_050--Hb_002007_210 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040 Hb_009615_070 Hb_009615_070 Hb_007009_010--Hb_009615_070 Hb_003605_090 Hb_003605_090 Hb_007009_010--Hb_003605_090 Hb_003502_090 Hb_003502_090 Hb_007009_010--Hb_003502_090 Hb_003414_050 Hb_003414_050 Hb_007009_010--Hb_003414_050 Hb_007009_010--Hb_010883_050 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_004889_010--Hb_003697_040 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_015778_010 Hb_015778_010 Hb_002007_210--Hb_015778_010 Hb_004837_160 Hb_004837_160 Hb_002007_210--Hb_004837_160 Hb_152784_010 Hb_152784_010 Hb_002007_210--Hb_152784_010 Hb_002007_210--Hb_003349_090 Hb_002007_210--Hb_009615_070 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_114310_080 Hb_114310_080 Hb_000638_170--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000638_170--Hb_000483_390 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31599 1.98701 4.5003 9.63624 2.75231 4.99933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.00518 12.0269 10.9128 5.53584 4.53774

CAGE analysis