Hb_000336_250

Information

Type transcription factor
Description TF Family: mTERF
Location Contig336: 313436-328557
Sequence    

Annotation

kegg
ID gmx:100818835
description uncharacterized LOC100818835
nr
ID KJB12621.1
description hypothetical protein B456_002G027700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2Q720
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G027700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35181: 321078-321568 , PASA_asmbl_35182: 321064-321591 , PASA_asmbl_35185: 327500-328023 , PASA_asmbl_35187: 328387-328612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_250 0.0 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
2 Hb_003052_140 0.0532562566 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
3 Hb_003609_030 0.0692651991 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
4 Hb_031527_020 0.0705967715 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
5 Hb_001946_040 0.0728967387 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000479_220 0.0747757341 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
7 Hb_007416_180 0.0771641443 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_005016_160 0.0777262562 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
9 Hb_005993_050 0.0779924475 - - Protein AFR, putative [Ricinus communis]
10 Hb_000334_220 0.0788891475 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
11 Hb_011491_010 0.0795609295 - - Protein YME1, putative [Ricinus communis]
12 Hb_000092_020 0.0830341665 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
13 Hb_015807_070 0.0837146497 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
14 Hb_000562_090 0.0839579084 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
15 Hb_001021_170 0.0843273222 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
16 Hb_001252_010 0.0843525166 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
17 Hb_000915_020 0.0848239548 - - unnamed protein product [Vitis vinifera]
18 Hb_008511_090 0.084870924 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
19 Hb_001005_190 0.0857222299 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
20 Hb_045793_010 0.085751375 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000336_250 Hb_000336_250 Hb_003052_140 Hb_003052_140 Hb_000336_250--Hb_003052_140 Hb_003609_030 Hb_003609_030 Hb_000336_250--Hb_003609_030 Hb_031527_020 Hb_031527_020 Hb_000336_250--Hb_031527_020 Hb_001946_040 Hb_001946_040 Hb_000336_250--Hb_001946_040 Hb_000479_220 Hb_000479_220 Hb_000336_250--Hb_000479_220 Hb_007416_180 Hb_007416_180 Hb_000336_250--Hb_007416_180 Hb_000125_170 Hb_000125_170 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_005489_080 Hb_005489_080 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_001946_040--Hb_031527_020 Hb_000309_040 Hb_000309_040 Hb_001946_040--Hb_000309_040 Hb_001247_130 Hb_001247_130 Hb_001946_040--Hb_001247_130 Hb_003371_150 Hb_003371_150 Hb_001946_040--Hb_003371_150 Hb_004055_150 Hb_004055_150 Hb_001946_040--Hb_004055_150 Hb_008253_030 Hb_008253_030 Hb_000479_220--Hb_008253_030 Hb_000070_080 Hb_000070_080 Hb_000479_220--Hb_000070_080 Hb_138596_010 Hb_138596_010 Hb_000479_220--Hb_138596_010 Hb_002615_090 Hb_002615_090 Hb_000479_220--Hb_002615_090 Hb_002253_080 Hb_002253_080 Hb_000479_220--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_000479_220--Hb_002843_120 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05313 6.41167 2.6277 3.20804 4.54401 4.40202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00706 3.80532 4.19658 2.64684 2.78755

CAGE analysis