Hb_000336_280

Information

Type -
Description -
Location Contig336: 352652-360320
Sequence    

Annotation

kegg
ID rcu:RCOM_1678460
description hypothetical protein
nr
ID XP_012070695.1
description PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10150 PE=4 SV=1
Gene Ontology
ID GO:0005976
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35191: 355433-357432 , PASA_asmbl_35192: 357504-357730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_280 0.0 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
2 Hb_001832_110 0.0576279191 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
3 Hb_002685_100 0.0711543958 - - low temperature inducible SLTI66 [Glycine max]
4 Hb_001226_100 0.0852653033 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_005333_210 0.0880859714 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
6 Hb_000215_130 0.0907941709 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
7 Hb_002304_190 0.0932256886 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
8 Hb_123560_020 0.1048080807 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
9 Hb_009486_120 0.1069574018 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
10 Hb_001439_040 0.1140471027 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
11 Hb_000018_120 0.1171006138 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_001186_120 0.1182168944 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
13 Hb_000753_180 0.1251933012 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
14 Hb_000836_260 0.1269775292 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_001300_140 0.1284889763 - - -
16 Hb_001358_120 0.1296731819 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
17 Hb_011440_010 0.1310726768 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
18 Hb_022092_050 0.1401295093 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
19 Hb_000017_320 0.1440896676 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
20 Hb_106321_010 0.1481890734 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]

Gene co-expression network

sample Hb_000336_280 Hb_000336_280 Hb_001832_110 Hb_001832_110 Hb_000336_280--Hb_001832_110 Hb_002685_100 Hb_002685_100 Hb_000336_280--Hb_002685_100 Hb_001226_100 Hb_001226_100 Hb_000336_280--Hb_001226_100 Hb_005333_210 Hb_005333_210 Hb_000336_280--Hb_005333_210 Hb_000215_130 Hb_000215_130 Hb_000336_280--Hb_000215_130 Hb_002304_190 Hb_002304_190 Hb_000336_280--Hb_002304_190 Hb_001832_110--Hb_002304_190 Hb_001832_110--Hb_002685_100 Hb_001832_110--Hb_001226_100 Hb_001439_040 Hb_001439_040 Hb_001832_110--Hb_001439_040 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120 Hb_002685_100--Hb_002304_190 Hb_000017_320 Hb_000017_320 Hb_002685_100--Hb_000017_320 Hb_001358_120 Hb_001358_120 Hb_002685_100--Hb_001358_120 Hb_002685_100--Hb_005333_210 Hb_001226_100--Hb_000215_130 Hb_001186_120 Hb_001186_120 Hb_001226_100--Hb_001186_120 Hb_001226_100--Hb_001439_040 Hb_001226_100--Hb_005333_210 Hb_001300_140 Hb_001300_140 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_005333_210--Hb_000215_130 Hb_000753_180 Hb_000753_180 Hb_005333_210--Hb_000753_180 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130 Hb_000215_130--Hb_001186_120 Hb_004709_030 Hb_004709_030 Hb_000215_130--Hb_004709_030 Hb_000215_130--Hb_001832_110 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.040547 1.31762 9.46896 4.02913 0.0386961 0.0516946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.01313 0 0.11877 11.8621 4.79172

CAGE analysis