Hb_000336_300

Information

Type -
Description -
Location Contig336: 379300-380438
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_300 0.0 - - -
2 Hb_001081_040 0.0406121436 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
3 Hb_000016_010 0.0562913347 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_008424_010 0.0575838323 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000994_010 0.0790949777 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
6 Hb_005432_050 0.0912835523 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
7 Hb_001066_020 0.1138048731 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
8 Hb_133862_010 0.1295364184 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
9 Hb_135941_010 0.1328712824 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
10 Hb_012264_040 0.144518476 - - -
11 Hb_041177_010 0.190591062 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
12 Hb_033623_010 0.2262797411 - - -
13 Hb_003637_030 0.2301046364 - - -
14 Hb_102408_010 0.233225506 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
15 Hb_004041_070 0.2392943393 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012278_010 0.244987841 - - -
17 Hb_086484_010 0.2502014459 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
18 Hb_102355_010 0.2542800381 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
19 Hb_002708_010 0.2746457926 - - -
20 Hb_185830_100 0.2762705525 - - -

Gene co-expression network

sample Hb_000336_300 Hb_000336_300 Hb_001081_040 Hb_001081_040 Hb_000336_300--Hb_001081_040 Hb_000016_010 Hb_000016_010 Hb_000336_300--Hb_000016_010 Hb_008424_010 Hb_008424_010 Hb_000336_300--Hb_008424_010 Hb_000994_010 Hb_000994_010 Hb_000336_300--Hb_000994_010 Hb_005432_050 Hb_005432_050 Hb_000336_300--Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_000336_300--Hb_001066_020 Hb_001081_040--Hb_000994_010 Hb_001081_040--Hb_000016_010 Hb_001081_040--Hb_008424_010 Hb_001081_040--Hb_005432_050 Hb_001081_040--Hb_001066_020 Hb_000016_010--Hb_008424_010 Hb_000016_010--Hb_005432_050 Hb_000016_010--Hb_001066_020 Hb_133862_010 Hb_133862_010 Hb_000016_010--Hb_133862_010 Hb_135941_010 Hb_135941_010 Hb_000016_010--Hb_135941_010 Hb_008424_010--Hb_005432_050 Hb_008424_010--Hb_001066_020 Hb_008424_010--Hb_133862_010 Hb_008424_010--Hb_135941_010 Hb_000994_010--Hb_000016_010 Hb_000994_010--Hb_008424_010 Hb_041177_010 Hb_041177_010 Hb_000994_010--Hb_041177_010 Hb_000994_010--Hb_005432_050 Hb_005432_050--Hb_001066_020 Hb_005432_050--Hb_133862_010 Hb_005432_050--Hb_135941_010 Hb_012264_040 Hb_012264_040 Hb_005432_050--Hb_012264_040 Hb_001066_020--Hb_133862_010 Hb_001066_020--Hb_135941_010 Hb_001066_020--Hb_012264_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.150932 0 0 0.0417641 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis