Hb_000337_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig337: 2206-3385
Sequence    

Annotation

kegg
ID pop:POPTR_0011s17060g
description hypothetical protein
nr
ID XP_012074162.1
description PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
swissprot
ID Q50EX6
description Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1
trembl
ID A0A097HUU6
description MYB family protein OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription repressor myb4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000337_020 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
2 Hb_001281_030 0.0018776612 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
3 Hb_000313_160 0.0063897698 - - BnaC02g20570D [Brassica napus]
4 Hb_001946_230 0.0086044409 - - -
5 Hb_003685_020 0.0104187517 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
6 Hb_034168_020 0.013388573 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
7 Hb_061183_010 0.0161277102 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
8 Hb_118410_020 0.0183970121 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
9 Hb_000039_140 0.0430257391 - - nuclease, putative [Ricinus communis]
10 Hb_007317_040 0.0478105952 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
11 Hb_003020_320 0.0495938657 - - -
12 Hb_000185_110 0.0547599733 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
13 Hb_029552_010 0.0574916935 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
14 Hb_001736_010 0.0589460235 - - ring finger protein, putative [Ricinus communis]
15 Hb_099335_030 0.0616866164 - - hypothetical protein M569_10107, partial [Genlisea aurea]
16 Hb_000140_020 0.0635349268 - - BnaA02g09930D [Brassica napus]
17 Hb_002056_040 0.0640025207 - - arsenical pump-driving atpase, putative [Ricinus communis]
18 Hb_019449_010 0.0686663574 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000192_100 0.0691010693 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_003598_060 0.0738795395 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]

Gene co-expression network

sample Hb_000337_020 Hb_000337_020 Hb_001281_030 Hb_001281_030 Hb_000337_020--Hb_001281_030 Hb_000313_160 Hb_000313_160 Hb_000337_020--Hb_000313_160 Hb_001946_230 Hb_001946_230 Hb_000337_020--Hb_001946_230 Hb_003685_020 Hb_003685_020 Hb_000337_020--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_000337_020--Hb_034168_020 Hb_061183_010 Hb_061183_010 Hb_000337_020--Hb_061183_010 Hb_001281_030--Hb_000313_160 Hb_001281_030--Hb_003685_020 Hb_001281_030--Hb_001946_230 Hb_001281_030--Hb_034168_020 Hb_118410_020 Hb_118410_020 Hb_001281_030--Hb_118410_020 Hb_000313_160--Hb_001946_230 Hb_000313_160--Hb_061183_010 Hb_000313_160--Hb_003685_020 Hb_000313_160--Hb_034168_020 Hb_001946_230--Hb_061183_010 Hb_001946_230--Hb_003685_020 Hb_001946_230--Hb_034168_020 Hb_003685_020--Hb_034168_020 Hb_003685_020--Hb_118410_020 Hb_034168_020--Hb_118410_020 Hb_061183_010--Hb_001281_030 Hb_061183_010--Hb_003685_020 Hb_061183_010--Hb_034168_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0516992 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.083096

CAGE analysis