Hb_000338_020

Information

Type -
Description -
Location Contig338: 11730-22636
Sequence    

Annotation

kegg
ID rcu:RCOM_0905390
description tryptophan synthase beta chain, putative (EC:1.3.1.74)
nr
ID XP_012091394.1
description PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
swissprot
ID O50046
description Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1
trembl
ID A0A067JAJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21253 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase beta chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000338_020 0.0 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
2 Hb_114932_010 0.0579512515 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_064692_010 0.059367537 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_009683_060 0.0722345043 - - -
5 Hb_009707_010 0.0734808256 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
6 Hb_125201_010 0.0809415175 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
7 Hb_167802_010 0.082895562 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
8 Hb_041534_010 0.0833471826 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
9 Hb_000904_090 0.0870838151 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
10 Hb_000086_600 0.0888627781 - - -
11 Hb_157957_010 0.0893968775 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
12 Hb_104855_020 0.0959422149 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_006648_030 0.1021802438 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
14 Hb_117602_010 0.1076942009 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_137612_010 0.1104991155 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002252_030 0.1172114466 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
17 Hb_002922_010 0.1177835161 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
18 Hb_005248_020 0.1197317665 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
19 Hb_142691_010 0.1200922718 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_005618_020 0.1205742368 - - hypothetical protein RCOM_1342750 [Ricinus communis]

Gene co-expression network

sample Hb_000338_020 Hb_000338_020 Hb_114932_010 Hb_114932_010 Hb_000338_020--Hb_114932_010 Hb_064692_010 Hb_064692_010 Hb_000338_020--Hb_064692_010 Hb_009683_060 Hb_009683_060 Hb_000338_020--Hb_009683_060 Hb_009707_010 Hb_009707_010 Hb_000338_020--Hb_009707_010 Hb_125201_010 Hb_125201_010 Hb_000338_020--Hb_125201_010 Hb_167802_010 Hb_167802_010 Hb_000338_020--Hb_167802_010 Hb_114932_010--Hb_009707_010 Hb_114932_010--Hb_009683_060 Hb_000904_090 Hb_000904_090 Hb_114932_010--Hb_000904_090 Hb_000086_600 Hb_000086_600 Hb_114932_010--Hb_000086_600 Hb_114932_010--Hb_167802_010 Hb_041534_010 Hb_041534_010 Hb_064692_010--Hb_041534_010 Hb_013591_010 Hb_013591_010 Hb_064692_010--Hb_013591_010 Hb_137612_010 Hb_137612_010 Hb_064692_010--Hb_137612_010 Hb_002422_020 Hb_002422_020 Hb_064692_010--Hb_002422_020 Hb_157957_010 Hb_157957_010 Hb_064692_010--Hb_157957_010 Hb_009683_060--Hb_167802_010 Hb_104855_020 Hb_104855_020 Hb_009683_060--Hb_104855_020 Hb_001623_020 Hb_001623_020 Hb_009683_060--Hb_001623_020 Hb_009683_060--Hb_000904_090 Hb_009707_010--Hb_125201_010 Hb_009707_010--Hb_000086_600 Hb_009707_010--Hb_000904_090 Hb_009707_010--Hb_009683_060 Hb_004586_120 Hb_004586_120 Hb_125201_010--Hb_004586_120 Hb_005618_020 Hb_005618_020 Hb_125201_010--Hb_005618_020 Hb_125201_010--Hb_157957_010 Hb_125201_010--Hb_114932_010 Hb_167802_010--Hb_001623_020 Hb_167802_010--Hb_104855_020 Hb_167802_010--Hb_000904_090 Hb_025477_030 Hb_025477_030 Hb_167802_010--Hb_025477_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0608623 0.011373 0.012316 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis