Hb_000339_070

Information

Type -
Description -
Location Contig339: 158742-164018
Sequence    

Annotation

kegg
ID tcc:TCM_031978
description Leucine-rich repeat protein kinase family protein, putative
nr
ID XP_011039410.1
description PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A061F9K9
description Leucine-rich repeat protein kinase family protein, putative OS=Theobroma cacao GN=TCM_031978 PE=4 SV=1
Gene Ontology
ID GO:0016020
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000339_070 0.0 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
2 Hb_007245_090 0.1117569481 - - -
3 Hb_005031_070 0.1208251457 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
4 Hb_002849_210 0.1258945045 - - protein binding protein, putative [Ricinus communis]
5 Hb_005214_110 0.1315569387 - - -
6 Hb_004223_230 0.1353543635 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
7 Hb_000116_470 0.1365309917 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
8 Hb_000729_060 0.141766843 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000809_040 0.147549514 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
10 Hb_000614_070 0.1487953582 - - -
11 Hb_006499_010 0.1550161917 - - -
12 Hb_011360_010 0.1553864516 - - PREDICTED: uncharacterized protein LOC104216696 [Nicotiana sylvestris]
13 Hb_000014_100 0.1555820458 - - -
14 Hb_004882_020 0.155778196 - - -
15 Hb_009026_050 0.1560239083 - - vacuolar ATPase F subunit [Hevea brasiliensis]
16 Hb_004607_150 0.1565705139 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
17 Hb_000313_380 0.157002605 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001930_070 0.1593620427 - - -
19 Hb_006189_010 0.1598437189 - - -
20 Hb_000124_020 0.1599887549 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]

Gene co-expression network

sample Hb_000339_070 Hb_000339_070 Hb_007245_090 Hb_007245_090 Hb_000339_070--Hb_007245_090 Hb_005031_070 Hb_005031_070 Hb_000339_070--Hb_005031_070 Hb_002849_210 Hb_002849_210 Hb_000339_070--Hb_002849_210 Hb_005214_110 Hb_005214_110 Hb_000339_070--Hb_005214_110 Hb_004223_230 Hb_004223_230 Hb_000339_070--Hb_004223_230 Hb_000116_470 Hb_000116_470 Hb_000339_070--Hb_000116_470 Hb_000014_100 Hb_000014_100 Hb_007245_090--Hb_000014_100 Hb_007245_090--Hb_005214_110 Hb_001930_070 Hb_001930_070 Hb_007245_090--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_007245_090--Hb_006499_010 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_005031_070--Hb_004223_230 Hb_004012_010 Hb_004012_010 Hb_005031_070--Hb_004012_010 Hb_002783_230 Hb_002783_230 Hb_005031_070--Hb_002783_230 Hb_002918_280 Hb_002918_280 Hb_005031_070--Hb_002918_280 Hb_169246_010 Hb_169246_010 Hb_005031_070--Hb_169246_010 Hb_001518_020 Hb_001518_020 Hb_002849_210--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_002849_210--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002849_210--Hb_009026_050 Hb_000179_050 Hb_000179_050 Hb_002849_210--Hb_000179_050 Hb_000124_020 Hb_000124_020 Hb_002849_210--Hb_000124_020 Hb_005214_110--Hb_001930_070 Hb_001158_030 Hb_001158_030 Hb_005214_110--Hb_001158_030 Hb_005214_110--Hb_000014_100 Hb_001186_060 Hb_001186_060 Hb_005214_110--Hb_001186_060 Hb_004295_020 Hb_004295_020 Hb_004223_230--Hb_004295_020 Hb_030620_010 Hb_030620_010 Hb_004223_230--Hb_030620_010 Hb_000117_040 Hb_000117_040 Hb_004223_230--Hb_000117_040 Hb_102864_010 Hb_102864_010 Hb_004223_230--Hb_102864_010 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_021068_050 Hb_021068_050 Hb_000116_470--Hb_021068_050 Hb_003151_050 Hb_003151_050 Hb_000116_470--Hb_003151_050 Hb_000091_090 Hb_000091_090 Hb_000116_470--Hb_000091_090 Hb_000116_470--Hb_000124_020 Hb_000376_050 Hb_000376_050 Hb_000116_470--Hb_000376_050 Hb_002411_200 Hb_002411_200 Hb_000116_470--Hb_002411_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.805614 0.408852 0.00410099 0.0739443 0.845358 0.407911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.766549 1.00869 0.815151 0.12934 0

CAGE analysis