Hb_000340_030

Information

Type -
Description -
Location Contig340: 17955-25882
Sequence    

Annotation

kegg
ID rcu:RCOM_0176320
description hypothetical protein
nr
ID XP_012092284.1
description PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35498: 18053-18368 , PASA_asmbl_35499: 20611-24836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_030 0.0 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
2 Hb_001723_010 0.0373393691 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
3 Hb_000139_320 0.0486623039 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
4 Hb_031641_010 0.0552872045 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002849_170 0.0586899129 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
6 Hb_003711_010 0.0597573807 - - isopropylmalate synthase, putative [Ricinus communis]
7 Hb_000529_060 0.0613748991 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
8 Hb_004517_020 0.0629230819 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
9 Hb_000661_120 0.0648639418 - - cap binding protein, putative [Ricinus communis]
10 Hb_000809_160 0.0648993049 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
11 Hb_000363_120 0.0650113536 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
12 Hb_026980_020 0.0660902776 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
13 Hb_002016_090 0.0661319529 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
14 Hb_004976_010 0.0661880703 - - hypothetical protein RCOM_1429110 [Ricinus communis]
15 Hb_012565_050 0.0662414941 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
16 Hb_000102_050 0.0671496036 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
17 Hb_001673_050 0.0673673972 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_000189_630 0.0675319066 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_001430_080 0.067829315 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
20 Hb_000373_170 0.0693879815 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000340_030 Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000340_030--Hb_001723_010 Hb_000139_320 Hb_000139_320 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_003711_010 Hb_003711_010 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_001723_010--Hb_003711_010 Hb_001723_010--Hb_000139_320 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000809_160 Hb_000809_160 Hb_031641_010--Hb_000809_160 Hb_031641_010--Hb_002849_170 Hb_031641_010--Hb_001723_010 Hb_031641_010--Hb_000529_060 Hb_004204_130 Hb_004204_130 Hb_031641_010--Hb_004204_130 Hb_001673_050 Hb_001673_050 Hb_002849_170--Hb_001673_050 Hb_002849_170--Hb_001723_010 Hb_002849_170--Hb_000529_060 Hb_004976_010 Hb_004976_010 Hb_002849_170--Hb_004976_010 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_003711_010--Hb_000373_170 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.226 26.8482 21.665 15.3034 15.1021 12.2473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15117 10.7931 7.97021 19.2126 12.6814

CAGE analysis