Hb_000340_040

Information

Type -
Description -
Location Contig340: 46718-63126
Sequence    

Annotation

kegg
ID rcu:RCOM_0176350
description glutathione peroxidase, putative (EC:1.11.1.12)
nr
ID XP_012092288.1
description PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
swissprot
ID F4IN78
description HUA2-like protein 3 OS=Arabidopsis thaliana GN=At2g48160 PE=2 SV=2
trembl
ID B9T4A6
description Glutathione peroxidase OS=Ricinus communis GN=RCOM_0176350 PE=3 SV=1
Gene Ontology
ID GO:0004601
description tudor pwwp mbt domain-containing isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35503: 46676-52111 , PASA_asmbl_35507: 53209-75394
cDNA
(Sanger)
(ID:Location)		 045_M14.ab1: 46760-52108

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_040 0.0 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
2 Hb_000169_020 0.040145187 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
3 Hb_005511_140 0.063478655 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
4 Hb_022092_030 0.0764722632 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
5 Hb_001511_090 0.0766804848 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
6 Hb_006100_020 0.0785760589 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
7 Hb_001008_130 0.0797572123 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
8 Hb_007413_010 0.0834255018 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
9 Hb_033312_130 0.0838702581 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
10 Hb_006913_020 0.0843281829 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
11 Hb_003417_040 0.0847618224 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
12 Hb_000193_330 0.0876809388 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
13 Hb_002686_230 0.0886263562 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_009288_010 0.0893041323 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_000139_080 0.0894481089 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
16 Hb_000035_090 0.0897528603 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
17 Hb_158530_020 0.0904633699 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
18 Hb_004324_360 0.0910332814 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
19 Hb_073171_070 0.0912619393 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
20 Hb_004218_180 0.0916805891 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_040 Hb_000340_040 Hb_000169_020 Hb_000169_020 Hb_000340_040--Hb_000169_020 Hb_005511_140 Hb_005511_140 Hb_000340_040--Hb_005511_140 Hb_022092_030 Hb_022092_030 Hb_000340_040--Hb_022092_030 Hb_001511_090 Hb_001511_090 Hb_000340_040--Hb_001511_090 Hb_006100_020 Hb_006100_020 Hb_000340_040--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_000340_040--Hb_001008_130 Hb_000139_080 Hb_000139_080 Hb_000169_020--Hb_000139_080 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360 Hb_000023_360 Hb_000023_360 Hb_005511_140--Hb_000023_360 Hb_000282_080 Hb_000282_080 Hb_005511_140--Hb_000282_080 Hb_001195_450 Hb_001195_450 Hb_005511_140--Hb_001195_450 Hb_005511_140--Hb_000169_020 Hb_073973_090 Hb_073973_090 Hb_005511_140--Hb_073973_090 Hb_001226_140 Hb_001226_140 Hb_022092_030--Hb_001226_140 Hb_022092_030--Hb_005511_140 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_003125_220 Hb_003125_220 Hb_022092_030--Hb_003125_220 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_002259_170 Hb_002259_170 Hb_001511_090--Hb_002259_170 Hb_001511_090--Hb_001008_130 Hb_001511_090--Hb_000023_360 Hb_001511_090--Hb_000169_020 Hb_002042_050 Hb_002042_050 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_006100_020--Hb_001008_130 Hb_001008_130--Hb_033312_130 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_000960_080 Hb_000960_080 Hb_001008_130--Hb_000960_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02654 11.7118 11.1248 9.30789 4.14391 5.54684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.92964 6.2845 6.93376 7.49176 17.3053

CAGE analysis