Hb_000340_060

Information

Type -
Description -
Location Contig340: 80786-81655
Sequence    

Annotation

kegg
ID rcu:RCOM_0176460
description hypothetical protein
nr
ID XP_002533076.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93ZT5
description EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1
trembl
ID B9T4A7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0176460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description eid1-like f-box protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35510: 80194-80602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001257_040 0.0929584116 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
3 Hb_000836_310 0.0953468151 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
4 Hb_004032_220 0.0960833421 - - Calmodulin, putative [Ricinus communis]
5 Hb_008143_020 0.1002246269 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
6 Hb_000127_220 0.1038680209 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
7 Hb_007858_020 0.1060892146 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
8 Hb_000422_050 0.1145296948 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
9 Hb_000032_150 0.1170599986 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
10 Hb_000571_030 0.1195215876 - - ammonium transporter, putative [Ricinus communis]
11 Hb_010964_010 0.1225185408 - - -
12 Hb_012496_010 0.1260466204 - - kinase, putative [Ricinus communis]
13 Hb_124953_010 0.1268890604 - - hypothetical protein RCOM_1314600 [Ricinus communis]
14 Hb_001004_010 0.1328200042 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005618_020 0.1328412043 - - hypothetical protein RCOM_1342750 [Ricinus communis]
16 Hb_004586_120 0.1330788511 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_005054_330 0.1350421088 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
18 Hb_000230_210 0.1357679627 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
19 Hb_106810_010 0.1387427754 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_034642_010 0.1394052208 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000340_060 Hb_000340_060 Hb_001257_040 Hb_001257_040 Hb_000340_060--Hb_001257_040 Hb_000836_310 Hb_000836_310 Hb_000340_060--Hb_000836_310 Hb_004032_220 Hb_004032_220 Hb_000340_060--Hb_004032_220 Hb_008143_020 Hb_008143_020 Hb_000340_060--Hb_008143_020 Hb_000127_220 Hb_000127_220 Hb_000340_060--Hb_000127_220 Hb_007858_020 Hb_007858_020 Hb_000340_060--Hb_007858_020 Hb_004586_120 Hb_004586_120 Hb_001257_040--Hb_004586_120 Hb_000032_150 Hb_000032_150 Hb_001257_040--Hb_000032_150 Hb_000422_050 Hb_000422_050 Hb_001257_040--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_001257_040--Hb_000322_020 Hb_124953_010 Hb_124953_010 Hb_001257_040--Hb_124953_010 Hb_001257_040--Hb_004032_220 Hb_000836_310--Hb_000127_220 Hb_000836_310--Hb_004032_220 Hb_106810_010 Hb_106810_010 Hb_000836_310--Hb_106810_010 Hb_012496_010 Hb_012496_010 Hb_000836_310--Hb_012496_010 Hb_000836_310--Hb_000032_150 Hb_004032_220--Hb_007858_020 Hb_004032_220--Hb_000032_150 Hb_004032_220--Hb_124953_010 Hb_005054_330 Hb_005054_330 Hb_004032_220--Hb_005054_330 Hb_001004_010 Hb_001004_010 Hb_008143_020--Hb_001004_010 Hb_097007_020 Hb_097007_020 Hb_008143_020--Hb_097007_020 Hb_008143_020--Hb_012496_010 Hb_006907_020 Hb_006907_020 Hb_008143_020--Hb_006907_020 Hb_008143_020--Hb_000422_050 Hb_000127_220--Hb_012496_010 Hb_000127_220--Hb_000422_050 Hb_000127_220--Hb_004032_220 Hb_000127_220--Hb_001257_040 Hb_007858_020--Hb_005054_330 Hb_007858_020--Hb_124953_010 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_007858_020--Hb_000032_150 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00179 67.4008 26.606 8.33573 0.123449 0.0919854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.604661 0.0950988 0 0.172746 3.1747

CAGE analysis