Hb_000340_100

Information

Type -
Description -
Location Contig340: 107902-111424
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13450g
description POPTRDRAFT_774885; hypothetical protein
nr
ID XP_012092291.1
description PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
swissprot
ID Q39089
description Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana GN=PAC PE=2 SV=1
trembl
ID A0A067JFD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21969 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein pale chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35516: 107810-111373 , PASA_asmbl_35517: 111812-120958 , PASA_asmbl_35520: 111812-115364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_100 0.0 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
2 Hb_000465_190 0.1036151023 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
3 Hb_000003_710 0.1090449478 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
4 Hb_003747_230 0.1096210437 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
5 Hb_001629_080 0.1146396616 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
6 Hb_005116_050 0.1174617921 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_002078_340 0.1202604549 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
8 Hb_009455_020 0.1221253962 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_011716_130 0.1225401282 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
10 Hb_000510_290 0.1225695106 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_000190_030 0.1227524591 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
12 Hb_000297_150 0.1230822678 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
13 Hb_003376_230 0.1234974852 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
14 Hb_002769_030 0.1236533191 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
15 Hb_000059_380 0.1239777034 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
16 Hb_000173_250 0.1241414271 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
17 Hb_000130_220 0.1246957711 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
18 Hb_000462_090 0.1254574269 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
19 Hb_002006_030 0.1256279696 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
20 Hb_011512_110 0.1263139265 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_100 Hb_000340_100 Hb_000465_190 Hb_000465_190 Hb_000340_100--Hb_000465_190 Hb_000003_710 Hb_000003_710 Hb_000340_100--Hb_000003_710 Hb_003747_230 Hb_003747_230 Hb_000340_100--Hb_003747_230 Hb_001629_080 Hb_001629_080 Hb_000340_100--Hb_001629_080 Hb_005116_050 Hb_005116_050 Hb_000340_100--Hb_005116_050 Hb_002078_340 Hb_002078_340 Hb_000340_100--Hb_002078_340 Hb_005253_030 Hb_005253_030 Hb_000465_190--Hb_005253_030 Hb_002758_010 Hb_002758_010 Hb_000465_190--Hb_002758_010 Hb_000465_190--Hb_005116_050 Hb_000120_290 Hb_000120_290 Hb_000465_190--Hb_000120_290 Hb_002205_230 Hb_002205_230 Hb_000465_190--Hb_002205_230 Hb_000152_110 Hb_000152_110 Hb_000003_710--Hb_000152_110 Hb_002769_030 Hb_002769_030 Hb_000003_710--Hb_002769_030 Hb_002241_010 Hb_002241_010 Hb_000003_710--Hb_002241_010 Hb_000094_070 Hb_000094_070 Hb_000003_710--Hb_000094_070 Hb_000948_150 Hb_000948_150 Hb_000003_710--Hb_000948_150 Hb_002006_030 Hb_002006_030 Hb_000003_710--Hb_002006_030 Hb_002759_190 Hb_002759_190 Hb_003747_230--Hb_002759_190 Hb_000317_260 Hb_000317_260 Hb_003747_230--Hb_000317_260 Hb_001587_180 Hb_001587_180 Hb_003747_230--Hb_001587_180 Hb_005539_010 Hb_005539_010 Hb_003747_230--Hb_005539_010 Hb_004440_060 Hb_004440_060 Hb_003747_230--Hb_004440_060 Hb_000227_170 Hb_000227_170 Hb_003747_230--Hb_000227_170 Hb_002600_090 Hb_002600_090 Hb_001629_080--Hb_002600_090 Hb_001348_170 Hb_001348_170 Hb_001629_080--Hb_001348_170 Hb_010368_010 Hb_010368_010 Hb_001629_080--Hb_010368_010 Hb_004837_270 Hb_004837_270 Hb_001629_080--Hb_004837_270 Hb_005588_080 Hb_005588_080 Hb_001629_080--Hb_005588_080 Hb_002686_170 Hb_002686_170 Hb_001629_080--Hb_002686_170 Hb_000130_220 Hb_000130_220 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_000482_040 Hb_000482_040 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_000046_540 Hb_000046_540 Hb_002078_340--Hb_000046_540 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5856 7.97588 20.0862 5.95953 8.36024 9.30889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4936 15.8363 18.7735 14.7603 31.3849

CAGE analysis